| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0525 |
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| Symbol | |
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| ID | 3968766 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 648310 |
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| End bp | 650007 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637919588 |
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| Product | hydrogenase regulation HoxX |
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| Protein accession | YP_526001 |
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| Protein GI | 90020174 |
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| COG category | [I] Lipid transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0223] Methionyl-tRNA formyltransferase
[COG1024] Enoyl-CoA hydratase/carnithine racemase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGAATTT TAATTTTATC GTCGGCATTT AGTGGGTTAA CTCAGCGCGT GCAGCGCGAG
CTTGTTTTAT TGGGACACAA TATCCAAGAA CACTACGATT TGGAAGAACA CTCATTGCGC
GCGCAACTCG CGAATTTCTC TCCAGATGTT GTTATTTGCC CTTTCCTTAC ACAGCGCATC
CCTGCGGATG TATATCAACA ATATTTGTGC TTGGTCGTGC ATCCTGGTAT TGAGGGTGAT
CGCGGGCCAT CGTCGTTAGA TTGGGCTATT AGTGGCGGTG CTGCAGAGTG GGGAGTTACT
CTGTTGCAAG CAGATGAAGA AATGGATGCT GGCGATATTT GGGGAACAAA AGTATTCCCA
TTACGCGAGG CCGGTAAAAC CAGTATTTAC AAACGTGAAG TAAGCACCGC GGCAATAGCG
TTAATAAAAG AAGCGTTGGC GAATATCGAA TCGGGTACGT TTAAGCCAAG ACCCTTGAAT
TACAGCAACC CAGAAGTGAA AGGTAAGTTG TTGCCGTTAA TGCGCCAGCC AGATAGAAAA
ATAGATTGGC AGAAAGATAG CACCGATAGC ATTGTGCGAA AATTGAACGC TGCGGATACC
AACCCGGGTG TACGCGACCA GCTTGGTGGC GCCGATGTGA ATTTATTTGG TGTAGCGCGC
GAGTCAACTT TACGCGGTGA GCCAGGTGAG TTTTTGGCGG TTTATAAAGG CGCGGTATGT
CGTGCAACCG TAGACGGTGC CGTGTGGATA AAGCAAATTA AATGCATCTC CCATCCCACT
ATTCCGCAGT TAAAACTACC TGCAACCGTT GCGCTGCCAT TACTATTAGG TAATGAGGTG
CTAAGTAACC TCGGAGCCCC GCAAGACCCG CACGCAATTG AAGATGTATG GGTAGACCGC
CGTGGTGATA CCGCCTACAT CTATTTTAAT TTTTACAATG GCGCAGCAAG CACGCAGCAG
TGTGTTGAAT TGCGCAATGC CATTCGCGAA GCTAAAAGCA GCGATGCCAA GTGTTTAGTG
TTTATGGGTG GCGAAGACTT CTTTAATAAT GGCATTCATT TAAATTGCAT TGAAGCGAGC
AAAGACCCAG CGCTAGAATC GTGGTTAAAC ATTAATGCTA TCGATGATGT GGTAAAAGAA
ATTATCGATA CGCCCAATCA GGTAACCGTT GCCGCATTGC GCAATAACGC CGGTGCCGGT
GGGGCGGTAA TGGCATTGGC CTGCGATGAA GTGATTATTC GCGAAGGTGT GGTCCTTAAC
CCGCATTATA AAAATATGGG TTTGTACGGT TCAGAATATT GGACTTACCT CATGCCTCGC
CGTTTGGGGC TTGCATTAAC CTCGCGTATA GTCGAAAAGT GTCAGCCAAT GTTGGCTCAC
GAAGCGATGG ACGTAGGTTT TGCCGATGTA ATGTTCGAAG AGGATTGGCA GAGTTTTCAT
GTGCAGTTAA TGAATTATTG CGAACAGTTG CCAAGCCGTT TGGATTTGAC CGAGTTTTTG
CGTGTAAAAG CGCAGCAACG CGCAAGCGAC GAGCAAGAAA AACCGCTAGA GCAATATCGT
CGCGAAGAGC TAATAGAAAT GAAAGAAATA TTCGACGACC CAGATGCTTT TTATCATCAG
GCTCGCCGAG AATTTGTGTT TAAAATCAAA CCAGTTAAAG AGGTTACGGC AGAAGCACAG
TCGCAAATGG TTGGTTAA
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| Protein sequence | MRILILSSAF SGLTQRVQRE LVLLGHNIQE HYDLEEHSLR AQLANFSPDV VICPFLTQRI
PADVYQQYLC LVVHPGIEGD RGPSSLDWAI SGGAAEWGVT LLQADEEMDA GDIWGTKVFP
LREAGKTSIY KREVSTAAIA LIKEALANIE SGTFKPRPLN YSNPEVKGKL LPLMRQPDRK
IDWQKDSTDS IVRKLNAADT NPGVRDQLGG ADVNLFGVAR ESTLRGEPGE FLAVYKGAVC
RATVDGAVWI KQIKCISHPT IPQLKLPATV ALPLLLGNEV LSNLGAPQDP HAIEDVWVDR
RGDTAYIYFN FYNGAASTQQ CVELRNAIRE AKSSDAKCLV FMGGEDFFNN GIHLNCIEAS
KDPALESWLN INAIDDVVKE IIDTPNQVTV AALRNNAGAG GAVMALACDE VIIREGVVLN
PHYKNMGLYG SEYWTYLMPR RLGLALTSRI VEKCQPMLAH EAMDVGFADV MFEEDWQSFH
VQLMNYCEQL PSRLDLTEFL RVKAQQRASD EQEKPLEQYR REELIEMKEI FDDPDAFYHQ
ARREFVFKIK PVKEVTAEAQ SQMVG
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