| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0390 |
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| Symbol | |
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| ID | 3967598 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 483312 |
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| End bp | 487139 |
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| Gene Length | 3828 bp |
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| Protein Length | 1275 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637919453 |
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| Product | ligand-binding sensor domain-containing protein |
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| Protein accession | YP_525866 |
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| Protein GI | 90020039 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3614] Predicted periplasmic ligand-binding sensor domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAATT GGCTAGGCAA TGAGAGCACA CAGATGCGGT TTGATGCTGC TCAAATCGCC
GTGGTTGCTG TGGCTTATCA CGCACTGGCG CAACTTGGAT TGTATTTCGC TATTCCACCT
GGGTTTGCCA CCGTATTTTG GCCTGCTTCT GGCGTTGCCC TAGCCGCTGT GATGTTGCGC
GGCCCGTGGA TGATGTTGGG CGTTTTACTG GGCTCGTTTT CGGTCAATCT TTATATTTCT
CTGCAATTAA ACGACTTTGC CATTAGCGCG GCCAACGTAT TGGTGGCGCT TGGCATTGCT
TGTTCGTCCG CTTTACAAGC TGGGTTAGGT GCCTGGCTTA TAAGTTATTG GCTAAAGCGG
CAAAACGGAC GCTTAACCCA GCTGCGTCAC CTGTTAGTAC TTGTTGGTTT AGGTGGCCCT
ATTGGGTGCA TGCTGGCGGC TACAGGGGGC ACCACTATTT TAGTGGCGAC TGGAGTCATG
CTGCCCGAGC AATGGTGGCA TAACTGGCTA ATGTGGTGGT TGGGCGACAC ATTGGGTGTT
GTGGTTATTG CGCCCGCGCT AGTAATTTTG GCGCAAAGCC CTAAATCTGT TTCGATACTG
CGTAAAACGC AGGTATGTAT ACCCCTTGCG GTGCTTTTTA TTTTATTGGC TTTCGGCTAC
TCGCGTTTTG AGTCACATAC GCTCGAGCGC TTCGACAAAG AAATTAACAA CCTTACAGAC
GGTGCTTACC TAGATGTACA AAGCAAATTA ATGGATTACG AGCGCTCGTT GATAGGGGTG
GTGTCGTTAT TTCGCAATTC AGAATTTGTC ACCGATGAGG AGTTTGCCAA TCAAACAATT
CCGCTAATTA ATAGCTCACC TTCACTTATT GCTCTGCAGT GGGTGCCCAG GGTTACGCGC
GATCAGCTTG CCGCGTTTGT TATACAGGCG CGCTCCAATG GATTGCCAAC CTACACAATA
CACAATACAG AAAACAATGA GCTTACAGAA ACTGCTGAGC GAGATGTGTT TTACCCCGTG
CGTTATGTAC GCCCCTTGCA AGGTAATGAA GTGATGCTGG GGTTTGATAT GTATTCCAAT
GAGGTGCGCC GCAACGCAAT TGATCTGGTG CTTACCAGTG GCCGCTCTGT GGCATCGGCA
CCAATAGACT TGCTCCAGTT GGATAATGAA AAAGGTTTCT TAATTATTTT CCCGCAACAC
CCCGCTAAAA GTAAAAATAT AATTGTTGGC GTATTTAAAG TAAGACCTGT TTTTAGAACC
GTTACCCACC AGCTGGCATC GTTTCCATTG GATTTGACCG TGACGGATGC CAACTCGGGG
GATGAGGTTT TTCAATGGGG CGGCAAAAGT GCTGGCGTTT ACCATTTAAT AGTAGATAGG
TTTTCAGTAG TTAAAACCGT CGCCTTTGGG CAGCGTACTT GGATTATGAA GTTTACTCCT
CCTTTGGAGT TAATTAGTGG TTACTTATAT AGAAATATGG CGCCATTACT TATCGCGGCG
GTCGCCTTTA TTGGCTTGTC GTCGTTGTTT TTGTTATCCA TCGCGCTAAG CGCCATGACC
TTGGAGGATG AGCTTCAAAC AAAAGAGAGC GATTTAAAAG CAGAAGAAAA TTTCTTAAAT
ACGGTGTTAA ATAATTTACC CTGTTACGTG GATGTACGTG AAGCTGAAGC CTTGACTTGC
GTTAGGCTCA ATCGCTTAGC AAAGGAATTT TGGCAGATTA ACACTAGCGA GCGCGGCCTA
GGCTATGATG CTTTCTATGA CAGCGAAGAG GCTGCCTTTC AACGCGAAGA AGATTTGCGC
ACTATTAGCA CGGGAAACAA AGTTGAAATA GGAATTAGAA AAATAGCGAC GCCAAACGGT
TATAAGTGGT TAAAGGCAAA AAAAGTACCT ATTTTCGACG GCAACAACAA TATTAAGTAC
GTGCTTAGTA TTTATGATGA TGTGACAGAG CAAAAAGAAG AGCATGAAAC GTTTAACTCG
GTGGTGGAGA ACTTACCTAA TGCGCTGCTC ATTGTTAACG AATACTCACG TATAGAGTAT
GCGAACCCCG CAGCCTACAA AAAATTCCCT CTTGATAGAA AGCTTACGCC TCTAAGTAGA
ATTATTCCTG AGAAGTTTCA TCACAAACAC GCAGAGTTAT TCAAACAATT TATTGCTCAA
CCTGAGAGCA AGCAAATGGC GCCAGGCAGA GACTTGTTGG CGGTCGATAT TAATGGCGAA
GAAATACCCG TTGAAATAAC ATTAACCTCT TTGGTATGGC TGGGGCGGGC GTGTGTAATG
GCGACAATAC ACGATCTGTC CGATCGGCAT CGTGCTGAGC AAGCTGAGAT TGAAGCGAAG
CACTTTTTTA GTAGTTTATT GAATGACATG GGGGAGAGCA TTTGGAGTGT GAATGCAGAG
GGTATTGCAA CCTATGTAAA CCCCGCACTG TGTGAGCAAC TTGGTTACAG CGCAGATGAA
CTGGTGGGCA AAAATGTAGA CCATTTAATT GGTGCTAGCG AACAGAATGA TAATCTGCTT
GCTTCTCTCA ACCCTGTGTA TGTGGCTATG CATAAACAAG AAAAAATAGT GGAGCGAAAT
AAAACGTTAA TTGCGAAAAA TAAACGTGCA GTACCGGTTG ATTACATTGT AACCCCGCAA
ATTAATTTGG CGGGTGGTAT TGAAGGGGCA GTGGTTGTAG CCGCAGATGT AAGTGAGCGT
ATAGCCGCGC TAGAAAGGTT ACAGGCGCAG CATGAGTTGA TATCGCTGGG GTTAGACGCC
TCCGGGCTTG GTTCGTGGCA GTGGGTTGCG GATATAGATC AGATAATTTG TGATGACAAC
CTGCACCGCA TATTTGGAAT GCCCATTGGC ACATTTGTAG GTGGCTATCG AGAGTTTTTA
GCCTTGGTAC ACCCCGATGA TCGGGAGCGA GTTGAAACGG TAACCAATAA ACATTCGCAC
ACAACAAACT TGTATGAAAT TATATATCGT ATAGTGCGCC CAGATGGGTT GGTGCGCTGG
ATACATGTAC GGGCTAAATA CTTAATAGAT AAAGCCGCCA ATCCGATAAA AATGCAAGGA
GTTGCTTGGG ATTGCACCAG TAATAAACAA ATGGAATTGG AGCTAAAGAA AAACGAAAAA
ACCATAGATG GCGTAAATAA ACAATTTGTA GATTACTCTG ACATGGTGAG CAAACAGGTG
TTACAGCCGA CACAGCAAGC CGTTGAAGTG GGTGAACGGT TGTTGCGAAA TTTAGAGAAG
CTTTCTACCG AAGAAATGGC CAATACCCTG CGTGAACTTA ACTACATAAA TACTTCTATC
GTGCATAGAG TTAGCGATCT TTCGCTTTAT GCAGCAATTG TTGGGGCTAG GGATGGTAAT
GAGCCAGTAG AAACCGTTGA GGTAGTAAAT AATTTGTTAA ATACGTTACT GCCTGTTTTT
AAGGCGGAAA ATATTGACTG TCGAATAGAA ACCCCCTTAC CTAGAGTAAA TGCGAATGCG
CAGTACTTAG AAGAAATATT CAAACGATTA ATTGATAACG CAATAACCCA CAATAACAGT
GAAGTAAAAA AAGTGCGTAT TGGCTGTAGC GTAAGAGATG GCCAGCCTGT GTTTTACGTA
GCTGATAATG GCAAAGGCTT ATCTGCAGCA GATAAACAAC GCTGGTTTAC TGCTAGCAAA
GTAGACATGA AAGATGAAAG TACACGAGAT AAGAGTACAC AAGATAAGAA CACGGCAGAC
GAACCAATGA GCTTAAAAAT TGTAGCCACA ATTGTTGATA AATTAAATGG TAAGTTGTGG
GCCGAGGATG AAGCGGGTAG AGGGACGGTT GTTTATTTTG CTGTTTAA
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| Protein sequence | MINWLGNEST QMRFDAAQIA VVAVAYHALA QLGLYFAIPP GFATVFWPAS GVALAAVMLR
GPWMMLGVLL GSFSVNLYIS LQLNDFAISA ANVLVALGIA CSSALQAGLG AWLISYWLKR
QNGRLTQLRH LLVLVGLGGP IGCMLAATGG TTILVATGVM LPEQWWHNWL MWWLGDTLGV
VVIAPALVIL AQSPKSVSIL RKTQVCIPLA VLFILLAFGY SRFESHTLER FDKEINNLTD
GAYLDVQSKL MDYERSLIGV VSLFRNSEFV TDEEFANQTI PLINSSPSLI ALQWVPRVTR
DQLAAFVIQA RSNGLPTYTI HNTENNELTE TAERDVFYPV RYVRPLQGNE VMLGFDMYSN
EVRRNAIDLV LTSGRSVASA PIDLLQLDNE KGFLIIFPQH PAKSKNIIVG VFKVRPVFRT
VTHQLASFPL DLTVTDANSG DEVFQWGGKS AGVYHLIVDR FSVVKTVAFG QRTWIMKFTP
PLELISGYLY RNMAPLLIAA VAFIGLSSLF LLSIALSAMT LEDELQTKES DLKAEENFLN
TVLNNLPCYV DVREAEALTC VRLNRLAKEF WQINTSERGL GYDAFYDSEE AAFQREEDLR
TISTGNKVEI GIRKIATPNG YKWLKAKKVP IFDGNNNIKY VLSIYDDVTE QKEEHETFNS
VVENLPNALL IVNEYSRIEY ANPAAYKKFP LDRKLTPLSR IIPEKFHHKH AELFKQFIAQ
PESKQMAPGR DLLAVDINGE EIPVEITLTS LVWLGRACVM ATIHDLSDRH RAEQAEIEAK
HFFSSLLNDM GESIWSVNAE GIATYVNPAL CEQLGYSADE LVGKNVDHLI GASEQNDNLL
ASLNPVYVAM HKQEKIVERN KTLIAKNKRA VPVDYIVTPQ INLAGGIEGA VVVAADVSER
IAALERLQAQ HELISLGLDA SGLGSWQWVA DIDQIICDDN LHRIFGMPIG TFVGGYREFL
ALVHPDDRER VETVTNKHSH TTNLYEIIYR IVRPDGLVRW IHVRAKYLID KAANPIKMQG
VAWDCTSNKQ MELELKKNEK TIDGVNKQFV DYSDMVSKQV LQPTQQAVEV GERLLRNLEK
LSTEEMANTL RELNYINTSI VHRVSDLSLY AAIVGARDGN EPVETVEVVN NLLNTLLPVF
KAENIDCRIE TPLPRVNANA QYLEEIFKRL IDNAITHNNS EVKKVRIGCS VRDGQPVFYV
ADNGKGLSAA DKQRWFTASK VDMKDESTRD KSTQDKNTAD EPMSLKIVAT IVDKLNGKLW
AEDEAGRGTV VYFAV
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