| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_3647 |
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| Symbol | |
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| ID | 4844053 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS155 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009052 |
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| Strand | - |
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| Start bp | 4268881 |
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| End bp | 4271304 |
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| Gene Length | 2424 bp |
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| Protein Length | 807 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640120915 |
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| Product | ribonuclease R |
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| Protein accession | YP_001051991 |
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| Protein GI | 126175842 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0028274 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAAAG ACCCTCATTT TGAGCGTGAA CAGGATAAGT ACGAAAACCC TATCCCAAGC
CGTGAGTATA TTATCGATTA CTTACGTTCT CAGAAATCAC CTATCACTCG TGACAGTATT
GCCGCGGCGT TAAACATCCA AGAGGAAGAA CAACTTGAGG CCCTGCGCCG TCGCCTTCGT
GCGATGGAAC GCGATGGCGA ACTCGTGTTC ACCCGTGGGC AGAGCTATGG CTTGCCCGAG
AAAATGGATC TTATTCCCGG CACTGTACTC GGACACAGAG AAGGCTTCGG CTTTTTCAAA
CCCGATGAAG GCGGTGATGA CTTATTTATT TCGAACCGCG ATATGCTGAT GTATTTCCAC
GGTGATAAAG TGCTGGCGCA AAAAGCGGGC ACAGATCGTC GTGGCCGTCG CGAAGCGCGT
TTGGTGCGTT TGATCCAGCC GCGCAGTGCC GCGATTGTTG GCCGTTATCA TGTTGATAGC
GGTATGGCAT TTGTCATTGC CGATGATAAG CGTATTACCC AAGAAATCTT AGTCGCGAAT
GAAGATCGCA ACGGCGCCCG TCAAGGCGAT GTGGTTGTGG TTGAATTAAC GCGTCGCCCA
GGTCGTTTTG TTAAGGCTGC GGGTAAAGTG ACTGAAGTGC TTGGTAAGCA AATGGCGCCG
GGGATGGAAA TCGAAATCGC CCTGCGTAAC TATGACTTGC CCCATACTTG GTCACCTGTG
ATCGAGAAGA AACTGCGCCG AATTCCCGAT GAAGTGACCG ACGCCGATAA AGTCGGCCGT
GTGGATTTAC GTCATCTGCC ATTAGTGACT ATCGACGGCG AAGACGCCCG CGATTTTGAC
GATGCCGTGT ATGCGGAGAA AAAAGCCGGT GGCGGCTGGC GTTTATGGGT TGCGATTGCT
GACGTTAGTT ATTATGTTCG CACCGATTCG GCTTTAGATA TCGAAGCGCG TGCCCGTGGT
AACTCAGTGT ATTTCCCATC GCAAGTGATC CCTATGCTGC CGGAGAAAAT CTCCAACGGC
CTATGTTCGC TTAATCCTCA CGTCGACCGT TTATGTATGG TCGCCGAAAT GACAGTGTCT
GCCAAAGGCA AGTTGTCGGG TTATAAGTTT TATCCGGCGG TGATGTATTC CCATGCCCGT
TTCACTTATA CCCAAGTCGC GGAGATGTTT GAAGGCGGCC CGATTGCGCC TGAGCATGAA
GCCTTGTTCC CGCATCTGCA GTGTTTACAG TCATTGTATT TAGCGCTAGA TGAGCAAAGA
GCTGAGCGTG GTGCGATTGC GTTTGAAACC ATGGAAACGC AGTTCATTTT CAATGAGCAG
CGCAAGATTG ATAAAATCGT GCCGCGTGGC CGTAATCAAG CACATAAAAT CATTGAAGAA
TGCATGATTT TAGCCAACGT TTCTGCAGCT AAATTTGTGA AGAAACACAA AGGCGACGTG
CTGTACCGAG TGCATGAAGC GCCATCTGAG CAAAAGTTGG CGAACTTTAA AGAGTTCCTT
GCTGAGCGTG GTTTGACTAT GCCTGGCGGA CTTGAGCCAA CGCCGTCAGA TTACCAGAAC
GTGATGCTGC AAATTGCCGA CCGTCCCGAT GCTGAACTTA TCCAAGTGAT GTTGCTGCGC
TCTATGCGTC AGGCAATTTA CACCCCAGAT AATGAAGGTC ACTTCGGTCT AGCCTTAGAA
GAATATGCGC ATTTTACCTC GCCCATTCGC CGTTATCCGG ATTTAGTCTT ACATCGTGTG
ATCCGTTATT TACTGGCGAA GGAAAGAGGC GAAGCCACAG AAAAGTGGAC GCAGGATGGT
GGCTACCACT ATCAACTCGA TGAACTCGAC CAATTGGGCG AAGAGTGTTC GACTACAGAA
CGGCGTGCCG ATGAAGCGAC TCGCGATGTT AGCGATTGGC TCAAGTGCGA GTTTATGCAA
GATCACGTCG GCGATACCTT CGAAGCTGTG ATTGCCTCAG TGACGAGCTT TGGTTTGTTC
GTGCGCTTAA ATGAGCTGTT TATCGATGGC TTAGTGCATA TCTCAAGCCT AGGTAGTGAT
TACTACCAAT TCGATCCTAT GCGTCAACGC CTTATCGGTG AGCATACAGG CCAAGTCTAT
CAAGTGGGCG ATCCTGTGAC GGTTAAGGTC GCTGCTGTTA ACTTAGATGA CAGACAGATT
GATTTAGTCA TGCTGGGCGA TGACGGCAAA GGTGGCAAGC GTAAAGCCTC TGCCAGCCGT
GATAAGCCGA TGACTGCCCG TGAGCGTGTT AATCGCGAAG GTGCTAAGCA AGGCAAAGCG
GGTAAAACCG CAACCCCTAG CACTAAGGCT GAAGCTGGCA AAGCCAAACC TAAGGCTAAA
GCGGGCACTA AAGCGAAAAA GACAGCAGTA AAAGATCCGG CTAAAAAGCC AAAAGCCGCT
AAGCGGAGCA CGAGAAAGAA ATAA
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| Protein sequence | MIKDPHFERE QDKYENPIPS REYIIDYLRS QKSPITRDSI AAALNIQEEE QLEALRRRLR
AMERDGELVF TRGQSYGLPE KMDLIPGTVL GHREGFGFFK PDEGGDDLFI SNRDMLMYFH
GDKVLAQKAG TDRRGRREAR LVRLIQPRSA AIVGRYHVDS GMAFVIADDK RITQEILVAN
EDRNGARQGD VVVVELTRRP GRFVKAAGKV TEVLGKQMAP GMEIEIALRN YDLPHTWSPV
IEKKLRRIPD EVTDADKVGR VDLRHLPLVT IDGEDARDFD DAVYAEKKAG GGWRLWVAIA
DVSYYVRTDS ALDIEARARG NSVYFPSQVI PMLPEKISNG LCSLNPHVDR LCMVAEMTVS
AKGKLSGYKF YPAVMYSHAR FTYTQVAEMF EGGPIAPEHE ALFPHLQCLQ SLYLALDEQR
AERGAIAFET METQFIFNEQ RKIDKIVPRG RNQAHKIIEE CMILANVSAA KFVKKHKGDV
LYRVHEAPSE QKLANFKEFL AERGLTMPGG LEPTPSDYQN VMLQIADRPD AELIQVMLLR
SMRQAIYTPD NEGHFGLALE EYAHFTSPIR RYPDLVLHRV IRYLLAKERG EATEKWTQDG
GYHYQLDELD QLGEECSTTE RRADEATRDV SDWLKCEFMQ DHVGDTFEAV IASVTSFGLF
VRLNELFIDG LVHISSLGSD YYQFDPMRQR LIGEHTGQVY QVGDPVTVKV AAVNLDDRQI
DLVMLGDDGK GGKRKASASR DKPMTARERV NREGAKQGKA GKTATPSTKA EAGKAKPKAK
AGTKAKKTAV KDPAKKPKAA KRSTRKK
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