| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_1975 |
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| Symbol | |
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| ID | 4844285 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS155 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009052 |
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| Strand | + |
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| Start bp | 2289285 |
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| End bp | 2289554 |
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| Gene Length | 270 bp |
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| Protein Length | 89 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640119195 |
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| Product | HrpO family type III secretion protein |
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| Protein accession | YP_001050348 |
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| Protein GI | 126174199 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4794] Type III secretory pathway, component EscS |
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| TIGRFAM ID | [TIGR01403] type III secretion protein, HrpO family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCGAAA CTATCATTGT ACATTTCACC TCAGAACTAC TGTGGATGGT GTTACTGCTG
TCGCTACCTG TCGTTATCGT GGCTTCAGTT GTCGGAGTTT TGGTTAGTCT TATTCAAGCC
CTGACCCAAA TCCAAGACCA AACACTGCAG TTTCTAATCA AACTCATCGC CGTGTGCGTG
ACACTCGTGG TCTGTTATCA CTGGATGGGC AGCTCACTGT TGAATTACGC CAGCATGGCT
TTCGATCAAA TTAGCCAAAT GGGGGATTAG
|
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| Protein sequence | MSETIIVHFT SELLWMVLLL SLPVVIVASV VGVLVSLIQA LTQIQDQTLQ FLIKLIAVCV
TLVVCYHWMG SSLLNYASMA FDQISQMGD
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