| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_4438 |
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| Symbol | |
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| ID | 7094357 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011668 |
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| Strand | - |
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| Start bp | 24563 |
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| End bp | 27151 |
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| Gene Length | 2589 bp |
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| Protein Length | 862 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 643467303 |
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| Product | type-IV secretion system protein TraC |
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| Protein accession | YP_002364261 |
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| Protein GI | 217980285 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR02746] type-IV secretion system protein TraC |
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Plasmid Coverage information |
| Num covering plasmid clones | 42 |
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| Plasmid unclonability p-value | 0.314552 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 89 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAAC GTATTAAAAA CGATCTCGGC GCACTCTATG CCAGCAGCAA ACAGCAACAC
AACCATCTGC ATCATGAATT GCCCTATCGC ATTTATGATG ATGCTGAACA AGTCTTTGAA
AATGCTAATT CGCTTGGTTT TGGCTTTGCC ATTTCGCTGT TTGGCGGGGC TAATGACGAC
TTAATCAAAA CCATGAACGC CTTGGTGTGC ACACTGCCAG AGGGCGACAA ATGGCATTAT
CAATTCGTCA TGGTCGGTAA TAATCAAGTC GGTGAGCTCA TCGAGCAAAA TCAAGCGCTG
CTCAGTGGCC GCAATGCCAT TTGCGATAAA TTTGCCTCAA ATGAAGCTAT CTATGCAAAA
CACAGTTCGA CCAAAGGCTT TGGCACCAAG CTCAGCAGCG CATATCACTA CGATCTAAAG
AACACTAAAG GGTTTTTCTT TGTGTCAACC ACCGAAGATA TGCCCGCACT GCTGGATATG
CGTCTTGGCA TTGAATCAGA GCTGGCGCAA ACAGGCATGC ACATTCGCCG CTTAGGCGCT
GACGATCTGA TTGAGCATTG CCGCGAGCAT TTAAATTTTT CGCATCAACA AGATCGCGTT
TCGCCCGCTA AATATAACGA GTATCAACCT CTCAACACCC AAATCCTCAG CCCTGACAGT
GAGTTCATCA TTAACCGTGA TTCGGTCAAT ATCCGTCACA CACCGATGCA ATCAGACAAC
AGTGTCGATA CCACCTTAAT CAATCTTGGG CTAAAGGGGC TGCCGAACGA CTTTAGGCTA
TATGCGTTTC CCAACTGTAT TGCATCACTC AGTTACACCA TGAACAGTGT TCAATGCCCT
TACCGTGTCA GCGTGTCTTT TTATATTAAT AAAACGGGTG AGCAAACAAC CCGTAACGAC
AGCAAAATTG GATCTTTGAC CAAAACGGTC AACTCCCCTA TGCGGTTGTT AATCCCCAGT
GCCGCGGATG AACTGGCTGA ACGCAAGGAG ATACAAAAAG GACTCAGCTC ACACGCCTTT
AAAATCACCA CCATGACATT GAATGTCACC CTGTATACGA CAGAAGAGAA GCACCGCCAC
GACACCTCAA AGGCGATTGC GACATTTCGC ACGGCAGGCA TTGATTTAAT CCGAAACAAT
AAACTGCAAG GCATGTGCAC ACTGTCCACC CTCCCGTTCT CAATGAGCGA AGGCTTTATG
AAAGACAGCC AAAAAGCGGG CCTGTGTTTC ATGATGAAAA CCTCAAACTT GGTGAACTTT
TTACCGATTG TTGCAGACTA CAAACGCTTA TCCGCAGGGT TACTCTTGCC AACAATGCGC
CATCAAATTA GCTATTTCGA TCCGTTTAAC TGCGGCAGTG ATAACTACAA CATGGCCATC
ACGGGCGGCT CAGGGGCAGG GAAGTCATTC TTCATGCAAG CCTTGGTAAA ATCGATTTTT
GCCAAAGGGG GCAAGGCATG GATTCTTGAC AAGGGTCAGA GTTACAAAAA ACTCACTCAA
ACATTAGGCG GCGTCTATCT CGATAGTTCG CAGATTTTCC TAAACCCGTT TACCCACTTA
GGCAAAGTTT TAAGCGTGCG GGATGCGGGT ACTTTTGGCC CTATCCTCGA TGATGAAGGT
CAAGCCATTG ATCCCATCAC CGAAGTGTTG GGAAACATCA CCGCGCTTAT CGCCACCATG
GCATCACCTG ATGAAAAGCT CACCGGATTT CAGACGGCAT TACTCGGCGA TGCTATTTTG
CTGGCATGGC AAAAATGCGG TAACGACACG CTGATTGACG ATGTGCAAAA GGCACTCTAT
GACATTGCCG CACAAAAAAA TGACGATACC CGTATCAGTG ATATCGCTGC GCAATTAAAC
AAGTTCTGTT CAAGCGGTAT TCATGGCGCA ATTTTCAATA AGCCCTCGAT GCTCGATCCC
AATATTGACA TTACCACGCT GGAACTTGAT GGATTTAAAG GCGAGCTACA ACGTCCGGTG
ATTTTCGCGT TGATGGTGAC GATTAGCCAA CAAATGTACT TATCGGGCCA ACGTTCTATT
CCGAAAATCT GTGTGATTGA AGAAGCGTGG TCACTCATGA GCGGCGCGAA TGCGCAAAGT
AAGGATTTCA TCAACGAAGG TTATCGCACA GTGCGTAAGT TCGGCGGCAG CTTTGCCACA
GTAACGCAAG GCATGAACGA CTTCTTTGCC AACGCCGAGG CCGAAGCGGC ACTGAACAGT
TCAGATATTC ATATCACCTT GCGCCAAGGT GATGGCTTTG GGGATTTCTT GAACAAGCAT
CCTGACCACT TCTCGCCCTT CGAGCAACAC ATGATCAAGT CATTCCCCCG CGCCAATGAT
GCGGGTCATT CCTGCGTGAT GCTCAAAGCG GGCGGGCTAG TGTCCTTTCA CCGGATTTTT
GCCGATCCAT GGTCGCGCGC CATGCTCTCA ACCGAGCCGA AAGAATTTGA GCATTGTGAG
AACCTTATTA AAGGCGGCAT GCCGTTACTC GATGCCATTG AACTGACAGC CCAACATTTC
TATCCCGATG ATATGGCTCG TTTTGATGCC ATTTTGTCCG CAGCAGCAAC CCACAAAGAG
GCCGCATAA
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| Protein sequence | MKQRIKNDLG ALYASSKQQH NHLHHELPYR IYDDAEQVFE NANSLGFGFA ISLFGGANDD
LIKTMNALVC TLPEGDKWHY QFVMVGNNQV GELIEQNQAL LSGRNAICDK FASNEAIYAK
HSSTKGFGTK LSSAYHYDLK NTKGFFFVST TEDMPALLDM RLGIESELAQ TGMHIRRLGA
DDLIEHCREH LNFSHQQDRV SPAKYNEYQP LNTQILSPDS EFIINRDSVN IRHTPMQSDN
SVDTTLINLG LKGLPNDFRL YAFPNCIASL SYTMNSVQCP YRVSVSFYIN KTGEQTTRND
SKIGSLTKTV NSPMRLLIPS AADELAERKE IQKGLSSHAF KITTMTLNVT LYTTEEKHRH
DTSKAIATFR TAGIDLIRNN KLQGMCTLST LPFSMSEGFM KDSQKAGLCF MMKTSNLVNF
LPIVADYKRL SAGLLLPTMR HQISYFDPFN CGSDNYNMAI TGGSGAGKSF FMQALVKSIF
AKGGKAWILD KGQSYKKLTQ TLGGVYLDSS QIFLNPFTHL GKVLSVRDAG TFGPILDDEG
QAIDPITEVL GNITALIATM ASPDEKLTGF QTALLGDAIL LAWQKCGNDT LIDDVQKALY
DIAAQKNDDT RISDIAAQLN KFCSSGIHGA IFNKPSMLDP NIDITTLELD GFKGELQRPV
IFALMVTISQ QMYLSGQRSI PKICVIEEAW SLMSGANAQS KDFINEGYRT VRKFGGSFAT
VTQGMNDFFA NAEAEAALNS SDIHITLRQG DGFGDFLNKH PDHFSPFEQH MIKSFPRAND
AGHSCVMLKA GGLVSFHRIF ADPWSRAMLS TEPKEFEHCE NLIKGGMPLL DAIELTAQHF
YPDDMARFDA ILSAAATHKE AA
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