Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal223_4063 |
Symbol | rpoB |
ID | 7089681 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS223 |
Kingdom | Bacteria |
Replicon accession | NC_011663 |
Strand | - |
Start bp | 4821924 |
End bp | 4825955 |
Gene Length | 4032 bp |
Protein Length | 1343 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 643462941 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_002359959 |
Protein GI | 217975208 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.918938 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000472151 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGTTTACT CCTATTCTGA AAAGAAGCGT ATTCGCAAAG ACTTTGGTAA GCGTCCAAAA GTTTTGGATA TCCCTTATTT ATTGTCTATC CAGCTAGACT CTTTTAAGAA GTTCACCGAT CAAGATCCTA CCGGTGAGCG CGGTTTAGAA GCCGCCTTCC GTAGCGTTTT TCCCATCAAG AGCTTTTCTG GTAATTCAGA ACTGCAATAC GTCAGCTATA AGCTTGGCGA GCCTGTTTTT GATGTGAAAG AGTGTCAGAT CCGTGGTGTT ACGTACTCAG CTCCACTACG CGTTAAATTA CGCATGGTGT TGTATGACCG TGAAGCAGCG GCGGGCACAG TAAAAGATAT TAAAGAACAA GAAGTCTACA TGGGTGATAT CCCATTGATG ACGGATAACG GTACTTTTGT TATCAACGGT ACTGAGCGTG TAATCGTATC TCAATTACAT CGTTCTCCAG GCGTGTTCTT TGATCATGAC CGTGGTAAAA CCCACTCATC AGGTAAGGTG CTGTATAACG CACGTATTAT TCCTTACCGT GGTTCATGGC TTGACTTTGA ATTCGATCCT AAAGATGCAC TATTTGTGCG TATTGACCGT CGCCGCAAAT TGCCTGCGAC CATCATGTTA CGTGCATTAG AATATTCTAC TCAAGAGATC CTCGATCTGT TCTTTGAACG CGTTGAGTTC AAGATTAAGA AAGATACTCT GGTTATGGCT TTGGTTCCTG AGCGTCTGCG TGGCGAAACT GCCAGCTATG ACATCAAGGA TGCTGAAGGT TCTGTATTGG TTGAAGCTGG TCGTCGTATC ACTGCGCGCC ACATTCGCCA ATTAGAAAAA ACCAATACCA CTGAGCTCGA AGTGCCAGTT GAATATATCG TGGGCAAATA TGCTGCTCAA GATTATATCG ATCCGGACAC GGGTGAAGTT TTAGTCTCTG CCAACAGTGA AATTAGCCTA GAAGATCTGG CTAAGTTATC ATTGGCCGGT ATTAAAGAAC TCAGCACGTT GTATATCAAC GAGCTAGATC ATGGTGCTTA TATTTCAGAT ACGCTGCGTA TCGATTCAAC CACTAACCGC TTAGAAGCGC TGGTTGAGAT CTATCGTATG ATGCGTCCTG GCGAGCCACC AACCAAAGAT GCTGCCGAAG CACTATTCCA GAACTTGTTC TTCAGTGAAG AGCGTTATGA CCTGTCTAAA GTAGGTCGTA TGAAGTTCAA CCGTCGTCTC AGCATTCCTG ATGACGAAGG TAGCGGTGTA TTGTCTAAAG AAGACATCGT CGCGGTAATG AAGAACATCA TTCATATCCG TAACGGTTTC GACGAAGTCG ATGATATCGA TCACTTAGGC AACCGTCGTA TTCGTAGCGT CGGTGAAATG GCTGAAAACC AATTCCGCGT AGGTTTAGTC CGTGTTGAGC GCGCCGTGCG TGAACGTCTA TCTTTAGGCG ATCTGAACGA GCTGATGCCA CAAGACTTGA TTAACGCTAA GCCAATTTCT GCTGCAGTGA AAGAGTTCTT CGGTTCTTCT CAGCTGTCAC AATTCATGGA CCAAAACAAC CCGCTGTCAG AAGTAACGCA TAAGCGTCGT ATTTCTGCTC TTGGCCCAGG TGGTTTGACT CGTGAACGTG CAGGCTTCGA AGTCCGCGAC GTACATCCAA CGCATTATGG TCGTTTATGT CCAATTGAGA CCCCTGAAGG TCCAAACATT GGTCTAATCA ACTCATTAGC AAGCTTTGCC CGTACTAACT CATACGGCTT CCTTGAAACG CCATACCGCA AGGTTATCGA CGGCGTGATT ACTGACGAAG TGGAATACTT GTCAGCAATC GAAGAAGGTC GTTATGTGAT TGCACAGGCG AACATTGAAA TTGATGCGAA CGGTCGTATG GCAGAAGAGC AAATTGCTTG TCGTCATAAA GGTGAATCTA CCTTTATGCG CGCTGCTGAC ATCCAGTATA TGGACGTTTC GCCACAACAG ATCATTTCTG TTGCTGCGTC ACTCATCCCG TTCTTAGAAC ACGATGATGC TAACCGTGCA TTGATGGGTG CGAACATGCA ACGTCAAGCC GTACCAACAC TGCGCTCTGA AAAGCCGCTA GTAGGTACTG GTATTGAACG TACTCTCGCT GTTGACTCAG GTGTTGTGGT TGTTGCTAAG CGTGGTGGTT TTGTAGACTA CGTTGATGCG AGCCGTATCG TTGTTAAGGT AAATGAAGAT GAGCTACGCC CAGGCGAAGC CGGTATCGAC ATTTATAATC TGACTAAGTA CACCCGTTCT AACCAAAACA CTTGTATCAA CCAACGTCCT TGTTGTTCAG TTGGTGAGCC AGTGGTTCGC GGTGACGTGT TAGCAGACGG TCCGTCTACT GACTTAGGTG ACTTAGCCCT TGGCCAGAAC ATGCGTATCG CGTTCATGCC TTGGAACGGT TACAACTTCG AAGATTCGAT CTTAATTTCT GAGCGCGTAG CGCAAGAAGA CCGTTTCACT ACTATCCATA TTCAGGAGCT GTCTTGTATT GCTCGTGATA CTAAGTTGGG TAGCGAAGAA ATCACGGCTG ATATTCCAAA CGTAGGTGAG TCTGCTCTGT CGAAACTCGA CGAGTCAGGT ATCGTTTACA TTGGTGCAGA AGTGAAGGGC GGCGATATTC TGGTTGGTAA AGTGACGCCA AAAGGCGAAA CACAGCTAAC GCCAGAAGAG AAGTTATTGC GAGCTATCTT CGGTGAAAAA GCGTCTGACG TTAAAGACAG TTCACTGCGT GTACCTAACT CTGTTAAGGG TACTATCATC GACGTTCAGG TATTTACCCG TGACGGCGTT GAGAAAGACA AGCGTGCAGT TGAAATCGAA GAGATGCACA TTGCCCAAGC TCGTAAAGAC TTAGGCGAAG AGTTCAAGAT CCTTGAAGAA GGTGTATTGA GCCGTGCGCG TAACTTGTTA ATCGGTGCTG GTTTCAGTGA CGCGCAAATT GCTGCCTTGC CACGTAAAGA TGTTTTGATT CAAGTCATTG ACGATGAAAC TAAACAAACT GAACTTGAGC AATTAGCTGA ACAGCATGAA GAGCTGAAAG CTGACTTCGA TAAGAAGTTT GAAATCAAAC GTCGCAAGAT CACCCAAGGT GATGACTTGG CTCCAGGCGT ACTCAAGATT GTTAAGGTTT ACTTAGCGGT TAAGCGTACT ATCCAACCAG GTGACAAGAT GGCGGGTCGT CACGGTAACA AGGGTGTTAT CTCTAAGATT TGCCCAATCG AAGACATGCC GTATGACGAA CAAGGTAACC CAGTAGACAT CGTATTGAAC CCACTAGGTG TTCCATCACG TATGAACATT GGTCAGGTAC TTGAAGTCCA TATGGGCGCC GCTGCCAAAG GCATTGGTAA CAAGATCACT GCGATGCTTG AAGAACAGCG TGAGCTGGCT GAAGTTCGTG GCTACATCAA ACAAGTTTAT GAATTAGGTG ACGAAGTGCA ACAGCGCGTC GATATCGATT CATTCACCGA TGATGAAGTA TTACGTCTTG CGACTAACCT GAAAGGCGGT ATCCCGATTG CAACTCCTGC ATTCGATGGT GCTAAAGAGA AAGAGATCAA GCAGATGCTT GAACTTGCAG GTTTGCCAAC CTCTGGTCAG TTGAAGTTGT TTGATGGTCG TACCGGTAAC GAATTTGAGC GTCAAGTAAC TGTTGGTTAC ATGTACATGC TCAAACTGAA CCACTTAGTT GATGACAAGA TGCACGCCCG TTCTACCGGT TCGTACAGCT TAGTGACTCA ACAACCACTG GGCGGTAAAG CTCAGTTCGG TGGTCAGCGT TTCGGTGAGA TGGAAGTGTG GGCACTAGAA GCATACGGTG CCGCTTATAC GCTTCAAGAA ATGCTCACTG TTAAATCGGA TGACGTTAAC GGTCGTACTC AGATGTATAA GAACATCGTC GACGGTAACC ATCAGATGCA ACCTGGCATG CCAGAGTCCT TCAACGTGTT ACTGAAGGAG ATCCGTTCAC TCGGTATTAA TATCGAGTTG GATCAGGCAT AA
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Protein sequence | MVYSYSEKKR IRKDFGKRPK VLDIPYLLSI QLDSFKKFTD QDPTGERGLE AAFRSVFPIK SFSGNSELQY VSYKLGEPVF DVKECQIRGV TYSAPLRVKL RMVLYDREAA AGTVKDIKEQ EVYMGDIPLM TDNGTFVING TERVIVSQLH RSPGVFFDHD RGKTHSSGKV LYNARIIPYR GSWLDFEFDP KDALFVRIDR RRKLPATIML RALEYSTQEI LDLFFERVEF KIKKDTLVMA LVPERLRGET ASYDIKDAEG SVLVEAGRRI TARHIRQLEK TNTTELEVPV EYIVGKYAAQ DYIDPDTGEV LVSANSEISL EDLAKLSLAG IKELSTLYIN ELDHGAYISD TLRIDSTTNR LEALVEIYRM MRPGEPPTKD AAEALFQNLF FSEERYDLSK VGRMKFNRRL SIPDDEGSGV LSKEDIVAVM KNIIHIRNGF DEVDDIDHLG NRRIRSVGEM AENQFRVGLV RVERAVRERL SLGDLNELMP QDLINAKPIS AAVKEFFGSS QLSQFMDQNN PLSEVTHKRR ISALGPGGLT RERAGFEVRD VHPTHYGRLC PIETPEGPNI GLINSLASFA RTNSYGFLET PYRKVIDGVI TDEVEYLSAI EEGRYVIAQA NIEIDANGRM AEEQIACRHK GESTFMRAAD IQYMDVSPQQ IISVAASLIP FLEHDDANRA LMGANMQRQA VPTLRSEKPL VGTGIERTLA VDSGVVVVAK RGGFVDYVDA SRIVVKVNED ELRPGEAGID IYNLTKYTRS NQNTCINQRP CCSVGEPVVR GDVLADGPST DLGDLALGQN MRIAFMPWNG YNFEDSILIS ERVAQEDRFT TIHIQELSCI ARDTKLGSEE ITADIPNVGE SALSKLDESG IVYIGAEVKG GDILVGKVTP KGETQLTPEE KLLRAIFGEK ASDVKDSSLR VPNSVKGTII DVQVFTRDGV EKDKRAVEIE EMHIAQARKD LGEEFKILEE GVLSRARNLL IGAGFSDAQI AALPRKDVLI QVIDDETKQT ELEQLAEQHE ELKADFDKKF EIKRRKITQG DDLAPGVLKI VKVYLAVKRT IQPGDKMAGR HGNKGVISKI CPIEDMPYDE QGNPVDIVLN PLGVPSRMNI GQVLEVHMGA AAKGIGNKIT AMLEEQRELA EVRGYIKQVY ELGDEVQQRV DIDSFTDDEV LRLATNLKGG IPIATPAFDG AKEKEIKQML ELAGLPTSGQ LKLFDGRTGN EFERQVTVGY MYMLKLNHLV DDKMHARSTG SYSLVTQQPL GGKAQFGGQR FGEMEVWALE AYGAAYTLQE MLTVKSDDVN GRTQMYKNIV DGNHQMQPGM PESFNVLLKE IRSLGINIEL DQA
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