| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_2008 |
|---|
| Symbol | |
|---|
| ID | 7086842 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | + |
|---|
| Start bp | 2369280 |
|---|
| End bp | 2370122 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 643460911 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_002357935 |
|---|
| Protein GI | 217973184 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.000126108 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAAC ATGTTCTTAA AGCGACATTG TTAACCCCCA GTGATGTGGC GTTTATCACA
GATGCCAATC GACCTGTGCT AACCCATACT CGCAATATGG CGGCGGAAGC GGGCATCGAG
CCTCATTCTC ATCCGCGGGG GCAGCTACTT TGGGCCGCGA AAGGCTTGTT ACGTGTCCGC
AGCGACAATG CCGTCTGGGT GGTACCTTCA ACCCATGCGG TGTGGATCCC CTGCAATTTG
CCCCATCAAG TGAACAGCGA AACCCACGCC CACACTCGCA ATATCTATAT TGATCCTAGC
TATGATGTTA GGCCACAGGA TACAAAAGTG GTGATGGTGA CGATGACAGC GCTGATGCGC
GAACTGGTGC TCAAACTCTG TGAGAGTTCA CACCTTTTAG GCAGTGGACA ACTGCATCGG
CTGGGTTTGG TTGCCATTGA TGAGCTCGAA ACTCTGGACA GCCTAGATGC TCATTTACCC
GCAGGCTCAG ATCCAAGACT CAGCCGCTTG ATCCAAAAGT TGATCCGGCA CCCAACAGTG
AATTACACCC TGACCGAGTT AGCCGAAATG GGCGGCGCGA GTGTGAGAAC GATTGAACGA
CTATTCAAAG CTGAAACTGG GCTCACTTAT CGACAATGGC GGCAAAGGTT TCGTTTGTTA
AATTCGCTTG AAAGCTTAAG CCAAGGAGAG AGCACGACTA GGGTGGCACA TAGTCTAGGT
TATCTGAGCG TCAGCAGTTT CAGTGCGGCT TTTAAAATGC AATTTGGTTG CACGCCGCAA
GATTATCCGC AGCATAAGCT GATGAAAAAC AGGAAAAATC AGTTTACTCC CGCGCAAGAA
TAA
|
|---|
| Protein sequence | MSKHVLKATL LTPSDVAFIT DANRPVLTHT RNMAAEAGIE PHSHPRGQLL WAAKGLLRVR
SDNAVWVVPS THAVWIPCNL PHQVNSETHA HTRNIYIDPS YDVRPQDTKV VMVTMTALMR
ELVLKLCESS HLLGSGQLHR LGLVAIDELE TLDSLDAHLP AGSDPRLSRL IQKLIRHPTV
NYTLTELAEM GGASVRTIER LFKAETGLTY RQWRQRFRLL NSLESLSQGE STTRVAHSLG
YLSVSSFSAA FKMQFGCTPQ DYPQHKLMKN RKNQFTPAQE
|
|---|
| |