| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_1298 |
|---|
| Symbol | |
|---|
| ID | 7089861 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | + |
|---|
| Start bp | 1533883 |
|---|
| End bp | 1535154 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 643460203 |
|---|
| Product | HAAAP family transport protein |
|---|
| Protein accession | YP_002357230 |
|---|
| Protein GI | 217972479 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0814] Amino acid permeases |
|---|
| TIGRFAM ID | [TIGR00814] serine transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0139419 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCAA CAATTACTGC TGCACAGTGG AAAGCAGATA CCCGCTTCGA TAGTACGGAT
TGGGGCTGGA TAATCATGAG TATCGGTATG GCAATTGGCG CGGGGATCGT GTTCTTGCCT
GTTCAGGTCG GTTTAATGGG TCTATGGGTG TTCTTACTGT CAGGCATTAT TGGCTATCCA
GCCATGTATA TGTTTCAGCG GTTATTCATC AATACCTTAG CTGAATCACC TGAGTGTAAG
GATTACCCGA GTGTGATTTC GGGTTACTTA GGTAAAAACT GGGGCATGTT GTTGGGCGGT
TTGTACTTCA TCATGCTGGT TATTTGGGTG TTTGTGTATT CAACGGCCAT TACTAACGAC
AGTGCTTCTT TTTTGCAGAG CTTTGGGGTG ACGAAAGACT TGTTGTCACA TAATCCCTTC
TACGGGTTAG CGCTGATCTG CGGCTTAGTT GCTTTAGCAT CCCGCGGCGA AAATCTACTG
TTTAAGATCT CCACTTTTAT GGTGCTGACT AAGCTGGGCG TTGTGGCTGT GTTAGGGCTA
TTGATGGTGG ACAAGTGGGA TATCAATAAT ATTGGCGCTA TTCCGGCAAC GGGAGATTGG
TTAAAAGATG CGGTCGTTAT GCTGCCCTTT ACGCTAACAT CGATTCTGTT TATTCAAAGC
TTAAGCCCTA TGGTGATTTC ATACCGTTCG CGGGAAAAAT CCTTAGCTGT AGCGCGTTTC
AAAGCGATGC GCGCCATGAA TATTGCCTTT GGTGTCTTGT TTGTCGTGGT GTTCTTTTAT
GCTGTGTCAT TCACGCTCGC TATGGGTCAT GAACAAGCGG TGCGGGCATC GGAAGAAAAT
ATCTCAGCCT TAGCCATGGT CGCCCAGGGC ATGCAGGGAC AAACGCTGAA ATTACTGAGT
CTGACACTGA ACATTTTTGC GGTCATGACG GCTTACTTTG GGGTGTATCT TGGTTTCAGG
GAAGCTTGCC AAGGGCTAAC CATGAATATG CTGCGTCGAT ATATGCCTGA AGATCGCATC
AATAAAAAGC TTGTGGGTTA CGGCATCATG ATTTTCACGA TTCTACTGTC GTGGGGTGCA
ATTGTATTGA ATGCGCCAGT GCTGAGCTTT ACGTCGATTT GCAGTCCAAT CTTTGGTTTG
GTCGGGTGTT TGATCCCTGC TTATTTAGTG TATCAAGTAC CTGCACTGCA TAAGTACAAA
GGCGCGTCGC TGTACATCAT TATCATCACA GGTTTATTGC TGTGTGTATC ACCTTTCTTG
GCGTTTAGTT AG
|
|---|
| Protein sequence | MDATITAAQW KADTRFDSTD WGWIIMSIGM AIGAGIVFLP VQVGLMGLWV FLLSGIIGYP
AMYMFQRLFI NTLAESPECK DYPSVISGYL GKNWGMLLGG LYFIMLVIWV FVYSTAITND
SASFLQSFGV TKDLLSHNPF YGLALICGLV ALASRGENLL FKISTFMVLT KLGVVAVLGL
LMVDKWDINN IGAIPATGDW LKDAVVMLPF TLTSILFIQS LSPMVISYRS REKSLAVARF
KAMRAMNIAF GVLFVVVFFY AVSFTLAMGH EQAVRASEEN ISALAMVAQG MQGQTLKLLS
LTLNIFAVMT AYFGVYLGFR EACQGLTMNM LRRYMPEDRI NKKLVGYGIM IFTILLSWGA
IVLNAPVLSF TSICSPIFGL VGCLIPAYLV YQVPALHKYK GASLYIIIIT GLLLCVSPFL
AFS
|
|---|
| |