| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_1187 |
|---|
| Symbol | |
|---|
| ID | 7087959 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | + |
|---|
| Start bp | 1398544 |
|---|
| End bp | 1399782 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 643460096 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_002357123 |
|---|
| Protein GI | 217972372 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.917574 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAGTA ATAAACCCTT ACGAATAATG ATGTTAACGG CGGTGGCCGC TTTCGTTCTT
TCTGCTTGTG GTGAGCAAAC AGCGCAGCAG GGGCCAGCAC CAAGTGCGCC TATGGTGGAT
GTCGCCCAAG TATTGCATGA GCGAGTGACC GAATGGGATG AGTTTACCGG CCGTTTACAG
GCGCCAGAAA GTGTCACCCT TATCCCGCGT GTATCTGGAT ATATCGACTC AGTGAATTTT
AAAGAAGGCG CCTTAGTGAA AAAAGGCGAC GTGTTATTTC GCATCGACCC GAGCGTATTT
GAAGTGGAAG TGGCCCGGTT AAAAGCAGAT CTTGCTAGCG CTATCTCTGC TGAGCAACTG
GCCACAAATG ACTTCGAACG AGCCCATAAA TTGTTTGACC AAAAAGCGGT GTCTGCCGAG
TTACTCGATA CCCGTGAGTC AAACAAACGT CAAACCGCGG CTGCAGTGGC TTCGGTGAAA
GCGGCCCTGA TGCGCGCCGA GCTTGATTTA GCTTATACCC AAGTGCAAGC GCCGATTGAT
GGTCGCGTGT CCTACGCGAA TGTCACCGCG GGCAATTATG TCACCGCAGG GCAGAGTGTG
CTGACCAGTC TAGTCTCTAC CGCCAGCATG TATGCGTATT TTGATGTGGA TGAGCAAACC
TATCTTAAAT ACGTGAAATT AACGGCCGAG AAGAAACGTA ATGATCCCCG CGCTGGCGAC
AACCCTGTGT ACATGGCCTT AGCCAATGAG CGTGATTATC AACATATCGG CATGGTCGAC
TTTGTGGATA ATGCGATGGA TAAACAGACC GGTACCATTC GCGTGAGAGC CTCTTTTGAC
AATGAAGACA ATAGCTTATT GCCTGGCTTG TTTGCTCGTC TTCGCACCGC AGGTAGTGGC
GCTTATGAAG GTATCTTGAT TGACGATAAA GCCGTTGGCA CAGATCTGAA TAATAAGTTT
GTGTTAGTGG TGGGCGCCGA TGGTTTAGTT GAATATCGCG GCGTGACCTT AGGCGAAAAA
GTCCAAGGAC TGCGCATCGT GACCCAAGGT TTGATGGCCG AAGATAAGAT CGTCGTCAAC
GGTATGCAGC GCGTGCGTCC TAAGATGCAA ATTGATCCGC ACATGGTTGA AATGGTCGAC
AGCGACAAGC TCGAAGCATT ACGCCAAGCC CAGTTAATCC TAGATAAAAA CCAAGATACT
TTGACGGCGC AAGCGGTCGA AACGGCTAGC CGCGGTTAA
|
|---|
| Protein sequence | MKSNKPLRIM MLTAVAAFVL SACGEQTAQQ GPAPSAPMVD VAQVLHERVT EWDEFTGRLQ
APESVTLIPR VSGYIDSVNF KEGALVKKGD VLFRIDPSVF EVEVARLKAD LASAISAEQL
ATNDFERAHK LFDQKAVSAE LLDTRESNKR QTAAAVASVK AALMRAELDL AYTQVQAPID
GRVSYANVTA GNYVTAGQSV LTSLVSTASM YAYFDVDEQT YLKYVKLTAE KKRNDPRAGD
NPVYMALANE RDYQHIGMVD FVDNAMDKQT GTIRVRASFD NEDNSLLPGL FARLRTAGSG
AYEGILIDDK AVGTDLNNKF VLVVGADGLV EYRGVTLGEK VQGLRIVTQG LMAEDKIVVN
GMQRVRPKMQ IDPHMVEMVD SDKLEALRQA QLILDKNQDT LTAQAVETAS RG
|
|---|
| |