| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_4269 |
|---|
| Symbol | |
|---|
| ID | 5756100 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | + |
|---|
| Start bp | 5047789 |
|---|
| End bp | 5049909 |
|---|
| Gene Length | 2121 bp |
|---|
| Protein Length | 706 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641290625 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
|---|
| Protein accession | YP_001556687 |
|---|
| Protein GI | 160877371 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.10557 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAGAT GGCAACACTT ACTTAAGAAA CTCAGTACGG ATGATCCAGT ACTGCAAGAA
AAGCTGTCGC TCTGGCAAGC ACATCCCCAC AAAACTCCCC TAGCCTTAAT TCAAGGCTTC
AGCTTTATTA GCGCCAACCA AGCGACACTC GGTTATTTTG AGACTGAGTA TGATGCGTTT
GTGAATGCGA CGCCCTATGA CTTTTCTCCG AGAATTCAAT CATCCGGCCG CAACAGTGTT
GAATATGCGA GGGAAATGAT CCTCGAAGCC ATTGCAGGAA ATAATGTTGA ATTCAACTGG
CTACACTTGA GTCAACTCGG CAATGAACTG CCAACTCGAG TAAACCTTTA TCGCTGCTAT
CTGCAGCAAC AGCCCGTTGT GCTCGTGGAA TTTCAAGCGC TCAATCGCCG TAATCAAATG
CGCGAAATTA TTACCGATGG CTTTGCCCAT ATTCCTAAAG AGATTTTGTC GACGACGCTC
GAGGAAAGTG CCGAAGCTGT GTATATCACA GACTCAGATG ATCAGATTTT GGCCGTTAAT
AAAGCTATGT GCCGTATTTG CGGTTATAGC GCCGAGCAGC TTATCAGTAA AACCCCTGAA
TTTTTAGAGT TGAAAAGCCA TCATTTAGGG GCAGAAACCG AATGCCAAAC TGCACTGAAG
CAAAGGGGCT TTTGGCAGGG TGAAACCTGG AAGAAACGTT CAGATAGTAG CAATTTCCCT
GCTTGGCAGA GTAGCCGTAA AATCATTACC GAAGATGGCG CTCACTATAA TGTGAATATT
TTCAGTGATA TTAGCACGAA AAAGCTGCTC GAAACTCAAC TGACGACCCG TGCTATGTAC
GATACCTTGA CTGGATTGCC TAACCGATTC CACCTTAAGC AGATCCTCAA TACTGCCCTC
GAAAAACTTA AAACCGATCC CCTCGCCCTC GGTGCGCTAA TGTTTTTAGA TCTCAATGGG
TTTAAAAATA TCAATGACAG CTTCGGCCAC TCCATGGGCG ATAGAGTATT ACAACTCGTC
GCAGCCAGAC TCGAAGCCGG TTGCATCGAA AAAGCCGACA TAGCCCGTAT GGGTGGAGAT
GAGTTTACCT TAGTGCTGCA AGACTGCAGC TGCAAAGATG AAATCCAACT GTTTGCAGAG
CAGATACTTA GTCTATTTGA GAGCCCCTTT GAAATTGAAG GGCAAAAGTT TTTCCTAGGC
ACGAGTATCG GCATTGCGCT ATTTCCGACC CACAGTGATA AAGCGGGACA ACTGATTAGC
CTTGCAGATA CAGCCATGTA TTGTGCTAAA AAGAGCTTAC CGCACCTCGT GTTTTACGAT
AAGGCTATGA GCCAAGCAGC AGAATTAAAG CTGCAGTTAA TCAATAGCCT AAGACATGCG
CACAGCTTAA AACAATTCAC TCTCGCCTAT CAGGCCATTG TGGATTTACA CACAAATCAA
ACGATAGCTG CTGAAGCCCT ACTGCGCTGG CAAAAATCAC CTACCGAGTA TTATGACGCC
GCCGATTTTG TGCCATTGCT GGAAGAGACA GGGTTAATTG TCAGTATTGG TCAATGGGTA
TTGGAACAGG CTTGCGTGCA AGCGGCACAA TGGCGGGCAC ATAATCAGGC AGACTTTAGA
ATTTCAGTCA ATGTGTCACC ACTGCAATTG GAACACTTAG ACTTTATCGA CCAAGTAATT
AACGCCTTGG ACATGGCTAA TTTACCTGCT GAAGCACTGA TTTTAGAAAT CACCGAATCG
GCACTGTTAC GCCAACCTGA GCAAGCACGA CTCACACTCA ACCGCATAAA AGCCCTAGGT
GTCAGCATTG CTATCGATGA TTTTGGTACT GGATTATCCT CACTCAGTCG TTTAGGCACT
TTGCCCATAG ACAGTGTAAA AATTGATGCC GAGTTTGCCT TGCGCTTAAA CGAAGTTTCA
GGACAAAAGC TCTGCAATGC CATAGTGCAG CTCGCGCAGG CACTGGATAT TCACTTCGTC
GCCGAAGGCA TAGAGACTCA ACAACAAAGG GACATAATGA CAGACATGGG CCAAGGTTTT
GCCCAAGGAT TTCTTTTTGG CTACCCGAGT TCAGTCGATA ACTTCACCCA AACCTTTCTT
ACGGAAAAAC GCTTAGCTTA G
|
|---|
| Protein sequence | MIRWQHLLKK LSTDDPVLQE KLSLWQAHPH KTPLALIQGF SFISANQATL GYFETEYDAF
VNATPYDFSP RIQSSGRNSV EYAREMILEA IAGNNVEFNW LHLSQLGNEL PTRVNLYRCY
LQQQPVVLVE FQALNRRNQM REIITDGFAH IPKEILSTTL EESAEAVYIT DSDDQILAVN
KAMCRICGYS AEQLISKTPE FLELKSHHLG AETECQTALK QRGFWQGETW KKRSDSSNFP
AWQSSRKIIT EDGAHYNVNI FSDISTKKLL ETQLTTRAMY DTLTGLPNRF HLKQILNTAL
EKLKTDPLAL GALMFLDLNG FKNINDSFGH SMGDRVLQLV AARLEAGCIE KADIARMGGD
EFTLVLQDCS CKDEIQLFAE QILSLFESPF EIEGQKFFLG TSIGIALFPT HSDKAGQLIS
LADTAMYCAK KSLPHLVFYD KAMSQAAELK LQLINSLRHA HSLKQFTLAY QAIVDLHTNQ
TIAAEALLRW QKSPTEYYDA ADFVPLLEET GLIVSIGQWV LEQACVQAAQ WRAHNQADFR
ISVNVSPLQL EHLDFIDQVI NALDMANLPA EALILEITES ALLRQPEQAR LTLNRIKALG
VSIAIDDFGT GLSSLSRLGT LPIDSVKIDA EFALRLNEVS GQKLCNAIVQ LAQALDIHFV
AEGIETQQQR DIMTDMGQGF AQGFLFGYPS SVDNFTQTFL TEKRLA
|
|---|
| |