| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_4187 |
|---|
| Symbol | |
|---|
| ID | 5756015 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | + |
|---|
| Start bp | 4953516 |
|---|
| End bp | 4955420 |
|---|
| Gene Length | 1905 bp |
|---|
| Protein Length | 634 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641290541 |
|---|
| Product | LppC family lipoprotein |
|---|
| Protein accession | YP_001556606 |
|---|
| Protein GI | 160877290 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3107] Putative lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.636952 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTAAAAA GCCTGAATAC AACTAAGTTC GTTTCCGTGG CCATTTTATC GGTAATCTTG
GCGGGTTGTG GTGTTTCATC GCCCAATTCC ACTGGAACAA CCGCCACATT GGCTACCTCA
TTAGCATCCG CACCTTTGAC GGCAAATGTC TATTTGGCGC AAGCGGCCAA TAGTAAAGAT
CCGCAGCAGC GCGATACTAA TCTGCTGCTA GCAGCCCATG CCTATATTAA TGCCAATGAC
TATGCCGCGG CGCAGAAGCT GCTTAAATCG ATACTGCCGA GCTTAACTCA GAGCCCAACA
TTACTGGCCG AACATAAATA CTTAACTGCA CGTGTGCTTG AACACACGTC CACCTACAGT
GATGCCATTA AAACCTTAAA TTATCCAAGT AATTGGAGCC TGCCAAGCTG GCAGATGACG
GCCTATCACC AGTTCAAAGC GCATTTATAT CAATTGAATA AACAGCCAAT TGAACAAGTA
CGCGAGTTGA GTTTACTGAC TACTTACTTG CCACCCGCCC AAGCCAACGA AGTGAATAAC
ACCATTTGGC AAGTGCTGCA GCCGATGCAC GAACAAACCA TAAAGACGTT TACGCAAGAT
GCTAAAAGTC CAGTGTTTGC AGGCTGGTTA CAACTGGCTT ATATCGCTAA GCATTATGCC
GTCGATCCCA CCCAGTTAGT GCGCTACTTA GGTGAATGGC AGAAACAAAA TCCTTATCAC
CCAGCTGCGG CAAAGTTGCC TGCCGATTTA GACAGAGCCC TCAACGCTAA GCCTTTTACA
CCGAAAAACA TTGCCGTGCT GTTGCCGCTG ACTGGCCCAA GAGCGAACGC CGCCAATGCG
ATTCGCCAAG GCATATTAGC CAGCTATATG GCGAAGCAAA ACGATAAAGT CGCAGTGAAT
TTTTACGATA CGGCCAACGA TGCGGCGAGT GCCTATCAAC AGGCGCTGAT GGCGGGAGCC
GAGTTTATTA TTGGCCCATT ACTGCCGACT GAAATCGAAC AACTGCAAGT GATGAATGCG
GCAAATACTG CCGCCACTAA TGCAGTGGCC AATGCTGCCA ACCCAGACAA AACGGCCAAT
ACGGTTGCAG CGGCTCCTGC TGCGCCTGTA CCACAACTCT TTTTGAATCA AGTGGATAAA
TTCACACCCG ATCCAAACAA ATTCTACTTT GCGCTATCGC CAGCCCAAGA AGCAGCCGAT
GCCGCCGAGC ATTTATATCA AGATGGCGTC ACTATGCCAT TGCTGCTCGC CAGCAATGAT
GCCCTTGGCA AACGTATGGC CGAGAGCTTT ATTCAAGCGT GGAAAAAGAA GAGCGATAAC
GTCGTCGAAG TCTATTACTA CGATGGCGGC GACAAAATGA AAACCACAGT GCAAGATGCC
CTTGGCGTTC GTGATAGCCA AGCCCGTATC GCGCGCATCA AGGAGCTGCT GGGTAACTCA
GTGCAGGCTG ACTTCCGCTC ACGCCAAGAT ATTGATGCCA TTTATATGAT TTCAACGCCG
CAGGATCTGA CTCTGCTCAA GGCCTTTATC GACGTTAACT TCAGCGTGTT CACTCAACCT
GTGCCCTTGT ATACCTCAAG CCGCAGCCGA GTTGAGAACG AAAGCACACA AACTGCGCAG
GATTTAAATA ACCTCACCCT CAGCGATGCC CCTTGGCTGA TGCAAAACGG CGAAGAAAAC
CTAATGGTCA ACACACTATT TTCGGGCTGG AATAACAGTC AGAAACGTTT GTTTGTTATG
GGTTATGATG CGATGGACTT GATCGGCCGT TTAGCACAAA TGCGCTCATT TACGGGTTAC
CAATTCAATG GCCGCAGCGG CGCTTTATCG GTTAGCCCAG ATGGCATAGT AAACCGCCAA
TTAAGCTGGG GACGTTACCA AAGAGGCAGC TTCCGCCAGC TATGA
|
|---|
| Protein sequence | MLKSLNTTKF VSVAILSVIL AGCGVSSPNS TGTTATLATS LASAPLTANV YLAQAANSKD
PQQRDTNLLL AAHAYINAND YAAAQKLLKS ILPSLTQSPT LLAEHKYLTA RVLEHTSTYS
DAIKTLNYPS NWSLPSWQMT AYHQFKAHLY QLNKQPIEQV RELSLLTTYL PPAQANEVNN
TIWQVLQPMH EQTIKTFTQD AKSPVFAGWL QLAYIAKHYA VDPTQLVRYL GEWQKQNPYH
PAAAKLPADL DRALNAKPFT PKNIAVLLPL TGPRANAANA IRQGILASYM AKQNDKVAVN
FYDTANDAAS AYQQALMAGA EFIIGPLLPT EIEQLQVMNA ANTAATNAVA NAANPDKTAN
TVAAAPAAPV PQLFLNQVDK FTPDPNKFYF ALSPAQEAAD AAEHLYQDGV TMPLLLASND
ALGKRMAESF IQAWKKKSDN VVEVYYYDGG DKMKTTVQDA LGVRDSQARI ARIKELLGNS
VQADFRSRQD IDAIYMISTP QDLTLLKAFI DVNFSVFTQP VPLYTSSRSR VENESTQTAQ
DLNNLTLSDA PWLMQNGEEN LMVNTLFSGW NNSQKRLFVM GYDAMDLIGR LAQMRSFTGY
QFNGRSGALS VSPDGIVNRQ LSWGRYQRGS FRQL
|
|---|
| |