| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_3969 |
|---|
| Symbol | |
|---|
| ID | 5755788 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 4673535 |
|---|
| End bp | 4674593 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641290315 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_001556389 |
|---|
| Protein GI | 160877073 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAAAA GTAAACTCAT TATCGCCGTT CCACTGTTAC TCGCTGCGGT TGCGGGAGGC
GGTTATTACT GGTGGACACA GGTACGTTTT ATCGAAACCA CTGATAACGC TTATGTTGAG
GCCGATATTT CCCATATTAG CGTTAAAGTG CCCGGCTACG TCGTGTTAAG CGATGTGACC
GATAACCAGC ATGTGCAAAA GGGTGAGTTA TTAGCTCAGC TCGAAGATAA CCAATTTAGC
GCCAAAGTGA GTCAAGCCGA AGCCTCACTG GCAAGTTCGA AGGCGGACTT GCAAACCCTA
GCCGCTAAGG TGGAGTTACA ACGGGCGTTA ATCACCCAAG CCAGTGCCGG TGTCGTGGCG
GCTGAGTCCG ATAAAATACG TGCACAGCAA CAATTGAGCC GCTCGAAAAA GCTTAAAGTC
AGTAATTACA GCTCTCAAGA TGATGTCGAT CAACTGCAAG CGGGATTCGA TTCTGCCGCC
GCACGTCTCG ATGAAGCCAA AGCCGTGTTA GTGGCAAAGC AACGCGAGTT AGCGGTTTTT
AATGCCCAAT TAGATCAGGC GGGTTCTGTG GTAGAACAGG CCGATGCGAC CTTAGAATTG
GCGAAAATTC AATTAAATGA TACCCGTGTG ACCGCACCTT TTTCTGGGGT GATTGGTAAA
CGTGGCGCTA TGGTGGGGCA GTACGTGCAG CCCGGCCAAG CACTCTACAG TTTGGTTCCG
GATGGGGCTG TGTGGATCAC GGCGAACTTT AAAGAGACCC AGATCCAACA TATGCAACCA
GGACAGTCGG TGCAGGTCAG TCTCGATGCG TTTCCCGACA AAACCTTTAT AGGTGTTATC
GATAGTCTGT CACCGGCGTC CGGAGCCAAA TTCAGTTTAC TGCCGGCGGA AAATGCTACA
GGTAACTTCA CTAAAATCGT GCAACGTATT CCCGTGCGTA TTCGCTTAGA TTTATCTGAG
GCAGAAGCAC ACATGCTACC GGGCTTAAGT GCGGTCGTGA AAGTGGATAC GGCGTCGGGT
ACTGCAATAT CGGCAATCGC AGCAAATACA GGTCGTTAG
|
|---|
| Protein sequence | MSKSKLIIAV PLLLAAVAGG GYYWWTQVRF IETTDNAYVE ADISHISVKV PGYVVLSDVT
DNQHVQKGEL LAQLEDNQFS AKVSQAEASL ASSKADLQTL AAKVELQRAL ITQASAGVVA
AESDKIRAQQ QLSRSKKLKV SNYSSQDDVD QLQAGFDSAA ARLDEAKAVL VAKQRELAVF
NAQLDQAGSV VEQADATLEL AKIQLNDTRV TAPFSGVIGK RGAMVGQYVQ PGQALYSLVP
DGAVWITANF KETQIQHMQP GQSVQVSLDA FPDKTFIGVI DSLSPASGAK FSLLPAENAT
GNFTKIVQRI PVRIRLDLSE AEAHMLPGLS AVVKVDTASG TAISAIAANT GR
|
|---|
| |