| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_3653 |
|---|
| Symbol | |
|---|
| ID | 5755467 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 4309759 |
|---|
| End bp | 4310508 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641289996 |
|---|
| Product | transcriptional regulator, CadC |
|---|
| Protein accession | YP_001556075 |
|---|
| Protein GI | 160876759 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3710] DNA-binding winged-HTH domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.409424 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGTATGC AATTGGGAGA CTGCAGGTTT GATCGAGAAC GAGGCATGCT GATTGAGTTG
TCTCGCGATG AATCTTGGCA TCTTTCTCGG GCCGAGTTAC AAGTGCTCAC GTTATTGCTT
GAACACCAAG GTCAGTTAGT TTCAAAGCAC ATGCTAAAAA CGGGGGATGG ACAAGGTCCG
CCATTAACCG ATGCCTCTGT GTCCCGCGCT ATATCGACGC TCCGCTCCTT TCTAGGCCCT
CAGCACGAGG GCTTGATCGA AACCGTTAAA GGCCAAGGTT ATTTATTGCG GCCATCAAAC
GGCAGCGAAT ATCGAGGCGT CAATTACCTC AGACTACACA CTGTGCCTTT GTGGAGTGCC
TTAGTGTTAT TCGGGGTGAT GTTGGCGTTT TCGGTGTTTT ATCTGAAACA CACAGATCAC
AGCAAGCCGA CCCAAGCCTT GATAACGTCA ATACTGTCGT TAGCCTCGGG TCAGCAAGTG
CGCTTGAACT TATATGCCGA CTCCAGTGCG AGTAACACCT TACTGTTTGA AATGGGCGAG
CGCTTAAGCA CGGGACTTAT TGCCTGCGGT AAAAGCGATT GGGCAGATGT TTATGCGTCT
TTATCCCATG ATAAACAGGT GCTTAATATT ACCTTTCGCG GTGAAAAACT CGGCCAGTCA
GTGCTGCGCA ATATTAGTAT CAGCGATTTT TCTCGCCCCA AAGCATTCAT CGACTCAGCC
TGGCTACGCG AGGTGGATAT CTGTGGCTAA
|
|---|
| Protein sequence | MCMQLGDCRF DRERGMLIEL SRDESWHLSR AELQVLTLLL EHQGQLVSKH MLKTGDGQGP
PLTDASVSRA ISTLRSFLGP QHEGLIETVK GQGYLLRPSN GSEYRGVNYL RLHTVPLWSA
LVLFGVMLAF SVFYLKHTDH SKPTQALITS ILSLASGQQV RLNLYADSSA SNTLLFEMGE
RLSTGLIACG KSDWADVYAS LSHDKQVLNI TFRGEKLGQS VLRNISISDF SRPKAFIDSA
WLREVDICG
|
|---|
| |