| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_2589 |
|---|
| Symbol | |
|---|
| ID | 5754348 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | + |
|---|
| Start bp | 3063790 |
|---|
| End bp | 3064638 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641288883 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_001555017 |
|---|
| Protein GI | 160875701 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00041275 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0546564 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACAT TAACGACTCA ATCAAGTCAG GTAAGCGTGT CTCAACCTCC TGTTAGCAAA
AGTATGAACA AAAACAAGTT TCCACCTAAA CGTGCCAATT CCAGTACCAG TTCCCCAGCC
AAGAGCACGA TTAAACCCGC TAAGCCCGCG AGCAGAGGCC CTGTCAACCG CGCTGCCGCC
GTAGATAGCA AAGTGGCGCC GGCGCGTAAT GCCAATGGCA GTTTAAAGAA AGAACCCTTT
AAAAATCCCA ATCGACGCGC AATTGCTGCG GCAAAACCGG TGCAGAGCCA AACGATCGCA
CCGATTATCG TGCTATTTAA TAAGCCTTTT GATGTACTTT GCCAGTTTAC CGATGAACAA
GGTCGTAAAA CCCTAAAAGA CTATATCCCC ATTGCTGACG TGTATGCCGC AGGCCGCTTA
GACAGAGACA GTGAGGGCTT GTTGTTGCTG ACCAATGACG GTCAATTACA GGCAAGACTG
ACAGAACCGA AAAAGAAAAC CTTTAAAACC TATTGGGTGC AAGTAGAAGG CGTGCCGACG
GAAGATGCAC TGACGAAACT GCGCCAAGGT GTTGAATTAA ATGATGGTAT GACGCTACCA
GCTAAAGTCA AAATCATGGA TTCACCCGAT ATTTGGCCAC GTAATCCGCC GGTGAGAGAA
CGCAAAAATA TCCCAACAAC TTGGTTAGAA ATCCAAATTC ATGAAGGCCG TAACCGCCAA
GTCAGACGCA TGACAGCGCA TATCGGTTTT CCGACCTTAA GATTAATCCG TTATAAAATA
GGCCAATGGA GTCTAGATAA TTTGCCATCG GGCGAGCATA AATGCATCCG CCTCGGTGAT
GAAGTCTAA
|
|---|
| Protein sequence | MTTLTTQSSQ VSVSQPPVSK SMNKNKFPPK RANSSTSSPA KSTIKPAKPA SRGPVNRAAA
VDSKVAPARN ANGSLKKEPF KNPNRRAIAA AKPVQSQTIA PIIVLFNKPF DVLCQFTDEQ
GRKTLKDYIP IADVYAAGRL DRDSEGLLLL TNDGQLQARL TEPKKKTFKT YWVQVEGVPT
EDALTKLRQG VELNDGMTLP AKVKIMDSPD IWPRNPPVRE RKNIPTTWLE IQIHEGRNRQ
VRRMTAHIGF PTLRLIRYKI GQWSLDNLPS GEHKCIRLGD EV
|
|---|
| |