| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_2279 |
|---|
| Symbol | |
|---|
| ID | 5754035 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | + |
|---|
| Start bp | 2701782 |
|---|
| End bp | 2702051 |
|---|
| Gene Length | 270 bp |
|---|
| Protein Length | 89 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641288570 |
|---|
| Product | HrpO family type III secretion protein |
|---|
| Protein accession | YP_001554707 |
|---|
| Protein GI | 160875391 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4794] Type III secretory pathway, component EscS |
|---|
| TIGRFAM ID | [TIGR01403] type III secretion protein, HrpO family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0217688 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.613678 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAA CTATCATAGT ACATTTCACC TCTGAACTAC TGTGGATGGT GTTACTGCTG
TCGCTACCTG TTGTTATCGT GGCCTCAGTT GTCGGAGTTT TGGTTAGCCT TATTCAAGCC
CTGACCCAAA TCCAAGATCA AACATTGCAG TTTCTGATCA AACTCATCGC CGTGTGCGTG
ACACTTGTGG TCTGTTATCA CTGGATGGGT AGTTCACTGT TGAATTACGC CAGCATGGCT
TTCGATCAAA TTAGCCAAAT GGGGGGGTAG
|
|---|
| Protein sequence | MSETIIVHFT SELLWMVLLL SLPVVIVASV VGVLVSLIQA LTQIQDQTLQ FLIKLIAVCV
TLVVCYHWMG SSLLNYASMA FDQISQMGG
|
|---|
| |