Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal195_2250 |
Symbol | |
ID | 5754006 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS195 |
Kingdom | Bacteria |
Replicon accession | NC_009997 |
Strand | + |
Start bp | 2675061 |
End bp | 2676266 |
Gene Length | 1206 bp |
Protein Length | 401 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641288541 |
Product | YscD/HrpQ family type III secretion apparatus protein |
Protein accession | YP_001554678 |
Protein GI | 160875362 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR02500] type III secretion apparatus protein, YscD/HrpQ family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.123284 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0388601 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTTCAG GATACAAGCT CTTATGGTTA AACGGTCCAT TGCAAGGACG AGAGCTATCT TTGCCTCTTG GTAACTTAAG CATCGGACCC GATGGTGATG TGTTAGCCAC ACTTGAACAC GTAGAACAAG TGGATTTATT GATCGATGAA ACGGGGGTTC GGCTGCAGTC TTGGGTACCG ACTTGGATAG CTGGACAGCC TGTCACCGAA GCCAACATGT TGCCATTGGG GCAAGCAATT GAACTCGCAG GTGTGGGTAT CCTCTTAGGT CACAGCAGCG ATGAATTAAA GCAACAGGCA ATGCCATCAC ATTGTCAAAC AAAGGCAAAG AAGTCTTGGT GGTTACTGGC GACAGTTTCA ATGCTCTCTA TGGTGCTATT AACGACAGTG TTATTAGCGC CTGCGAAGAT GCCTATCGCC GAGTTGACAC AAGCACAGTG GTTATCGCAG CAGTTGCAGA CCGATGGTTT AAACGGAGTT CAAGCTCATT GGTCAAAGGA TGGCGTGGTG ACGCTGAGCG GCTTTTGCCA AGATTCACAA CGTATGGCGC GGTTTCTTGG TGACATCAAA GGACAAGGTA TTTTATTTAT AGAGCAGACC ACTTGCGGCG ATCAGTTGAT ACGTAATGTC AAAGATGTCT TAGTCCAAAA TGGGTTTGCC AATGCCCTTG TAACCTTAGG GACTGAGCCT GGTAATGTCA TCATCTCGGG CGCGATTCAA TCAGGGGAGC CCTGGGATAA AGCAGTGTCT AGCTTGAATA ACTTGCCCGG ACTCGTTAAT TGGCAAGTTA GCAATCAGGT TGACAGTCAA CTCAAACCGC TCATCTGCGC GTTGCGAAAC AAAAATTTAC TCGTCGGTCT CATGATAGAA AGGATCAATG ATGCCATCGT CATGACGGGT AAAGTCAGTG AACAACAACA GCAACAGATC ATGGCTGTCG CGCAAGGATT AGAACCAACA CATGCCAGTG GATTGAAATT AGTATTTCAA AATATTCCAG TACGAGACGA ACTTAATCAT TTATTAAATG CTTCTGTGGT GACCTATGGT GGTAATGCAC AGTCTCCATT CATTGAGTTA TCGAGTGGTG TTCGGTTATC AACGGGTAGC AAATTAGATA ATGGTTATGT CGTGGAGTAT ATGAACATTC ATGGATTAGA TCTCAGTAGA GCCGGTGAGT TAATTCATGT ACCACTTATT TTTTAG
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Protein sequence | MSSGYKLLWL NGPLQGRELS LPLGNLSIGP DGDVLATLEH VEQVDLLIDE TGVRLQSWVP TWIAGQPVTE ANMLPLGQAI ELAGVGILLG HSSDELKQQA MPSHCQTKAK KSWWLLATVS MLSMVLLTTV LLAPAKMPIA ELTQAQWLSQ QLQTDGLNGV QAHWSKDGVV TLSGFCQDSQ RMARFLGDIK GQGILFIEQT TCGDQLIRNV KDVLVQNGFA NALVTLGTEP GNVIISGAIQ SGEPWDKAVS SLNNLPGLVN WQVSNQVDSQ LKPLICALRN KNLLVGLMIE RINDAIVMTG KVSEQQQQQI MAVAQGLEPT HASGLKLVFQ NIPVRDELNH LLNASVVTYG GNAQSPFIEL SSGVRLSTGS KLDNGYVVEY MNIHGLDLSR AGELIHVPLI F
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