Gene Sbal195_1164 details

Gene Information

• Locus tag: Sbal195_1164
• ID: 5752891
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella baltica OS195
• Kingdom: Bacteria
• Replicon accession: NC_009997
• Strand: +
• Start bp: 1379914
• End bp: 1380306
• Gene Length: 393 bp
• Protein Length: 130 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 641287434
• Product: type IV pilus biogenesis protein PilE
• Protein accession: YP_001553600
• Protein GI: 160874284
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4968] Tfp pilus assembly protein PilE
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 10
• Fosmid unclonability p-value: 0.536283
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAGGTTC AATGTAAAGG TTTTACACTA ATTGAAGTTA TGATAACGGT TGTTATTATC 
GGAATCTTAG CTGCTATTGC TTACCCATCC TACACTCAAT ACATAGCATT GAGTGCTAGG 
TCGGAAGGAT TGGCTGCATT AATGCGTATT GCAAATTTAC AAGAGCAGTA TTACTTAGAT 
AATCGTGTCT ATGCAACTGA TTTAACTAAA TTAGTTGGCG CAAATCCTTA TGTGACAGAG 
CATCAGCACT ACTCAGTGTC ATCAAGTGGG ACGTCTAGCT TTACGATTAA GGCTGTTGCT 
CAGGGCGTTC AGGCTAGCCG TGATGCTTCT TGCTCTCCTT TAACAATATC AGATACTGGG 
GCAAAAGGTC CGAGTGCGGA GTGTTGGAAA TGA 

 

Protein sequence

MKVQCKGFTL IEVMITVVII GILAAIAYPS YTQYIALSAR SEGLAALMRI ANLQEQYYLD 
NRVYATDLTK LVGANPYVTE HQHYSVSSSG TSSFTIKAVA QGVQASRDAS CSPLTISDTG 
AKGPSAECWK