| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_0617 |
|---|
| Symbol | |
|---|
| ID | 5752334 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | + |
|---|
| Start bp | 736954 |
|---|
| End bp | 739800 |
|---|
| Gene Length | 2847 bp |
|---|
| Protein Length | 948 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 641286879 |
|---|
| Product | P pilus assembly protein porin PapC-like protein |
|---|
| Protein accession | YP_001553055 |
|---|
| Protein GI | 160873739 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.309663 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTTA TTATACACCT ATTAACGTTA TTTTTTGTTT TTTTTTCATC ACACTCTTCG
GCAAAAAATG AAGAGCAATC TTCATATCCG ATTGAGTTCT CTGATTTCTA TATAAAACAA
ACAGGAAAAG TTAGACTTGT TGTTGCTGGT GAAATTAAAG ATATTGAAGT AGTTGGTACT
TTTAATTATG ATGGTATTAA TGTTTCCGCC GATGATGTAA ACCAAAAAAC GATAAGAAAT
TATTTGGTAA ACTATATCAA TGATAAAGAA GTTGATATAG TCATCAGAGA ACTCATTGAT
GGCATTAATG CTAACCCAGG CTGTGAAAAT ATCATTAGTG ATTGCGTACC GAATGTTTTG
CCTAATGAAG TAAGTTATTC TTTTGATTTT GATAACAATA CATTAAAGAT ATTTGCTGGC
ACATCATTGA TTACTAAGCA GAATAATAAA GAGTATTTGC CGTCTTTAAG GAGTGGTAAT
GGGCTTGTCA ATAACTCAAC CTTGTATACT CAGTTTAGTA ATGAAGCGTC CACTAGTTTC
AATTTTTCAA ATAAAACCAC TATCGGTTTG CCGGTTGGGT TTGTAGAGTT AGACACCCAA
GCTAGAAATG CAGGTGATAA TTTTGATGTG TATAGTGCTG TTTTTGATAC AGAATTTGGT
GACAAGAGGA TAGTGTTCGG CTACCTCAAC AATACAGGAA GAAGCTTTAA TACAACGGAT
ATTTTGAATA ATAACGCTGA TTACTCAGCT TTTAATTTAC AATTTGGGTC TAGCCAAAAT
CTACTTAAAG GTGGCGCAAA AGGTTCTCAA CAATTGTCAT TTATAGCTCC GCAAGATGGA
CAGATAGAAC TCTATCTAGG TAATAGGTTA TTGCTATCGA AGTCTGTATC ATCAGGTAGA
CAAAGCATAT CTTACTCAGA GTTACCTCAA GGCGCGTACA CCGTAAATTT AAAACTCATA
TCAGCAGGAA CAGTACTTAT TGACGATATG ATTCAAGTGG TCAATAATAA TAATTTTATA
TTAGCTTCTG GTGATGTTGA TTACGCATTC AATGCCGGTG TGTTTGACAC CAAAAAATTT
AGACATACGA CGCATGATTA TTTTAACGAT GTGCATACAA CAGAAAATGA TTTTAAAAGA
GGTTATCTTC AGGCTAAATC TTCATGGAGA TTAGCTGAGC CTGTTATATT ATATAGTGGA
ATAACAACAA ATGTTGATGA GCATTATTCT CAAATCGGTG CAAGGTACAT ATATGAAGAT
TTATTTTCAG CAGATTACTT CTTAGGGTAT TTTTCTACTG GTGACATATA TCAATCAGCT
AACATTAAAT TTGGCCGATT ATCGTTATCA GCTAAGGCGT TTGATTTAGA TTACAACACT
AGGAATTTTA CACTTTCAAA TCAATTATAT GGTACGAATC CATATAAAAA CTTTTCTATA
AGTTATTCTA AACCTTTCTT TGGTGGCAAT GGTTATTTAA ATTACAATAA TTACAGTAGT
AAAAATTATT ATGGAATAAA CAACGATAAT AGTATTGTTA TCGAGAAGCC AATTGATTAT
ATCTATAATA TTAATGCTTT AAATAATGTT TTAAATAATG CTTTAAACAA TGGCTCATAT
AGTACAATAA GTAATGAGAA CTATAATATA GGTTGGTCTA CTAATATTTA TAGCGGCACA
TTAACGCTCA ACAGTAACTA CAATTCTAAT AGTGCTTACG ATGAGGTTAA ATTCGGCATT
TATTGGAGTC AACGTTTTGG TAAAAGTGTA GCCGGAGGTT TGTCTGTAAT GACTAACAAT
AAAGGTTCTT CCCAATATAA TAATTCATTG AGTTTAAATG CAAGTAATGA TAATTGGTAC
GCCAATCATA CAGTGATGGC CAGTTTACTT AATGACGATA ATGATGATAA TTTTGAGAGT
TCTCTTTCCG GGACTTATTA TTGGCAGAAC GACAAGGCTA CTGTTAATGC TTACAATTAT
GTAAACAGTA AAGGGTTACT TATTTCTTCA GGCACTTTGC AAAGCACTCA AGTAGTGTCA
GCAGATTCGA TATCTTTAAC AAAGAGTAAT GGTAATGCAT TTGCAAGCAT AAACTTAGAA
TCTGACATTC CAATATCGAA AATACGTTAC AATTTATATT CTGATAAGTA CTCCAAAAGT
GGCTATATTT CGGGTTCCGA AAATACGATA TTAGATATAA ATCCTTATGA TCAGGTTTTG
TTTTCGCTGG ATGATGTAAA TAATGTTGAA ATATTATCCC CAACTGAAAG CAAATTTGTT
TATCCAGGTA CGGTTATTAG TATAGACAAC GTGATTAAAA GCCTTGATAG TCAGGTTTTT
ATTGTCAGCG ATATTCTTGG TAAGCCAGTA AGTCAAATTC GATGTTCAGG GAATGGCTGT
CGCGGTGTTG AACCTCTATC TAATGATGGC GTGTTTAGAG TTAAATTTCA AAAAGGGAGT
ACTTTCACAT TAACATCTGA AAGACGTCAA TGTGTTTTTG ATAAAGATGA ACCCAAAAAA
TATATTAATG CTGTTTGTTT GCAGGGCTTA TATCATGCTG ATGACAATGA AATTACTCAA
GCAGATGAAA CAGAAGGCAC TTTAGGTGAC ATTGAGGGCT TTGCTTATAT CGGTTACACG
TTAAATATGA ATACTGTAGA TGCTCTCGAA AAAGTTGGTT TACCTTTTAA AAGTATATTT
GTAGGTAAAA CACAATATAT TTATGTAAGG CATTCTAACT CATACAGCTC TGTTCAACTA
GATGTTTTAG AGTCTATTGG TGCAAAGTTG ATACCAAACA ATATCGATAT TCAAACCTTA
TTTACAGGGT ATTTCTATCA TGAATAA
|
|---|
| Protein sequence | MNFIIHLLTL FFVFFSSHSS AKNEEQSSYP IEFSDFYIKQ TGKVRLVVAG EIKDIEVVGT
FNYDGINVSA DDVNQKTIRN YLVNYINDKE VDIVIRELID GINANPGCEN IISDCVPNVL
PNEVSYSFDF DNNTLKIFAG TSLITKQNNK EYLPSLRSGN GLVNNSTLYT QFSNEASTSF
NFSNKTTIGL PVGFVELDTQ ARNAGDNFDV YSAVFDTEFG DKRIVFGYLN NTGRSFNTTD
ILNNNADYSA FNLQFGSSQN LLKGGAKGSQ QLSFIAPQDG QIELYLGNRL LLSKSVSSGR
QSISYSELPQ GAYTVNLKLI SAGTVLIDDM IQVVNNNNFI LASGDVDYAF NAGVFDTKKF
RHTTHDYFND VHTTENDFKR GYLQAKSSWR LAEPVILYSG ITTNVDEHYS QIGARYIYED
LFSADYFLGY FSTGDIYQSA NIKFGRLSLS AKAFDLDYNT RNFTLSNQLY GTNPYKNFSI
SYSKPFFGGN GYLNYNNYSS KNYYGINNDN SIVIEKPIDY IYNINALNNV LNNALNNGSY
STISNENYNI GWSTNIYSGT LTLNSNYNSN SAYDEVKFGI YWSQRFGKSV AGGLSVMTNN
KGSSQYNNSL SLNASNDNWY ANHTVMASLL NDDNDDNFES SLSGTYYWQN DKATVNAYNY
VNSKGLLISS GTLQSTQVVS ADSISLTKSN GNAFASINLE SDIPISKIRY NLYSDKYSKS
GYISGSENTI LDINPYDQVL FSLDDVNNVE ILSPTESKFV YPGTVISIDN VIKSLDSQVF
IVSDILGKPV SQIRCSGNGC RGVEPLSNDG VFRVKFQKGS TFTLTSERRQ CVFDKDEPKK
YINAVCLQGL YHADDNEITQ ADETEGTLGD IEGFAYIGYT LNMNTVDALE KVGLPFKSIF
VGKTQYIYVR HSNSYSSVQL DVLESIGAKL IPNNIDIQTL FTGYFYHE
|
|---|
| |