Gene SbBS512_E4052 details

Gene Information

• Locus tag: SbBS512_E4052
• Symbol: rfaY
• ID: 6269362
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: -
• Start bp: 3785234
• End bp: 3785926
• Gene Length: 693 bp
• Protein Length: 230 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 641727892
• Product: lipopolysaccharide core biosynthesis protein
• Protein accession: YP_001882324
• Protein GI: 187730092

Plasmid Coverage information

• Num covering plasmid clones: 45
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTACAA GTATACGTTA TCGCGGCTTC TCATTTTATT ACAAAGATAA TGATAATAAA 
TATAAAGAAA TCTTTGATGA AATACTGGCC TATAATTTTA AAACAGTAAA AGTATTATGT 
AATATTGATG ATACCAAAGT ATCGTTGATT GATACGAAAT ATGGTCGCTA TGTTTTTAAA 
GTCTTTGCTC CGAAAACGAA AAGGAATGAA CGTTTTTTAA AATCTTTTGT AAAAGGTGAC 
TACTATCAGA ATTTGATCGT TGAAACCGAT CGTGTCATAA GTGCAGGTCT TACTTTTCCT 
AATGATTTTT ATTTTCTGGC TGGGCGTAAA ATTTTCAACT ATGCCAGTGT TTTTATCATG 
CTTATCGAGT ATGTCGAGGG CGTAGAGCTC AATGATATGC CGATTATTCC AGAAAATGTT 
AAAGCAGAAA TTAAGGCTTC AATGGAAAAA TTGCATGCCT TAAATATGCT ATCGGGCGAC 
CCACACCGGG GTAACTTTAT CGTTAGTAAA GATGGTGTCA GGATAATTGA CCTATCCGGT 
AAAAGCTGTA CGGCAGAGCG TAAAGCTCGT GATCGTCTGG CCATGGAACG TCACCTGGGT 
ATTGCCAACG AAATAAAAGA TTATGGCTAC TATTCAGTAA TCTACAGAAC CAAACTACGC 
AAATTTATTA AAAAATTAAA AGGCAAAGCG TAA 

 

Protein sequence

MITSIRYRGF SFYYKDNDNK YKEIFDEILA YNFKTVKVLC NIDDTKVSLI DTKYGRYVFK 
VFAPKTKRNE RFLKSFVKGD YYQNLIVETD RVISAGLTFP NDFYFLAGRK IFNYASVFIM 
LIEYVEGVEL NDMPIIPENV KAEIKASMEK LHALNMLSGD PHRGNFIVSK DGVRIIDLSG 
KSCTAERKAR DRLAMERHLG IANEIKDYGY YSVIYRTKLR KFIKKLKGKA