Gene SbBS512_E3893 details

Gene Information

• Locus tag: SbBS512_E3893
• Symbol: glgX
• ID: 6269361
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: +
• Start bp: 3617872
• End bp: 3619845
• Gene Length: 1974 bp
• Protein Length: 657 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 641727748
• Product: glycogen debranching enzyme
• Protein accession: YP_001882182
• Protein GI: 187730923
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases
• TIGRFAM ID: [TIGR02100] glycogen debranching enzyme GlgX

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACACAGC TCGCCATTGG CAAACCCGCT CCCCTCGGCG CGCATTACGA CGGTCAGGGC 
GTCAACTTCA CACTTTTCTC CGCTCATGCC GAGCGGGTAG AACTGTGTGT CTTTGACGCC 
AATGGCCAGG AACATCGCTA TGACTTGCCA GGGCACAGTG GCGACATTTG GCACGGTTAT 
CTGCCGGATG CGCGCCCGGG TTTGCGTTAT GGTTATCGCG TTCATGGCCC CTGGCAACCC 
GCCGATGGGC ATCGCTTTAA CCCGGCGAAG TTGTTGATTG ATCCTTGCGC GCGGCAAATT 
GACGGGGAGT TTAAAGATAA CCCGCTGCTG CACGCCGGTC ATAATGAACC TGACTATCGC 
GACAACGCCG CCATTGCGCC GAAATGCGTA GTGGTGGTTG ATCACTATGA CTGGGAAGAT 
GATGCCCCGC CGCGCACGCC GTGGGGCAGC ACCATCATTT ATGAAGCCCA TGTCAAAGGA 
TTAACGTACT TGCACCCGGA GATTCCGGTC GAGATCCGTG GCACTTATAA AGCCCTCGGG 
CATCCGGTGA TGATCAACTA TTTGAAACAA TTGGGCATTA CCGCGCTGGA ACTGCTGCCA 
GTGGCGCAGT TTGCCAGTGA ACCACGTCTG CAACGCATGG GGCTAAGTAA CTACTGGGGT 
TACAACCCGG TGGCGATGTT TGCGCTGCAT CCGGCGTATG CCTGCTCGCC AGAAACGGCG 
CTGGATGAGT TTCGCGATGC AATCAAAGCA CTGCATAAAG CGGGTATCGA AGTCATTCTT 
GATATCGTGC TCAACCATAG TGCGGAACTG GACCTCGACG GCCCGTTATT CTCACTGCGT 
GGGATCGATA ACCGTAGCTA TTATTGGATA AGAGAAGACG GCGATTATCA CAACTGGACC 
GGTTGCGGCA ACACGCTCAA TTTGAGTCAT CCGGCGGTGG TGGATTATGC CAGCGCCTGC 
CTGCGTTATT GGGTAGAAAC CTGTCACGTC GATGGTTTCC GCTTTGATCT GGCGGCAGTC 
ATGGGCCGTA CGCCAGAGTT CCGTCAGGAT GCGCCGTTGT TTACCGCTAT CCAGAACTGC 
CCGGTGCTCT CGCAGGTGAA GTTAATTGCT GAACCGTGGG ATATCGCCCC TGGTGGTTAT 
CAGGTGGGAA ATTTCCCGCC GCTGTTTGCC GAGTGGAACG ATCATTTCCG CGATGCTGCC 
CGTCGTTTCT GGCTACATTA TGATTTGCCT CTGGGGGCGT TTGCCGGGCG TTTTGCTGCC 
TCCAGCGATG TTTTTAAACG TAATGGTCGT CTGCCGAGTG CCGCGATTAA TCTCGTCACT 
GCGCATGACG GTTTTACGCT TCGCGACTGC GTTTGCTTCA ACCATAAACA CAATGAAGCA 
AACGGAGAAG AAAATCGCGA CGGGACCAAC AACAATTACA GTAACAATCA TGGTAAAGAA 
GGGTTAGGCG GTTCTCTTGA CCTGGTTGAA CGGCGGCGCG ACAGTATTCA CGCCTTGTTA 
ACAACGTTGT TGCTCTCCCA GGGTACGCCG ATGTTACTGG CCGGTGACGA ACATGGTCAC 
AGCCAGCATG GCAATAACAA TGCCTACTGT CAGGATAACC AATTAACCTG GTTGGACTGG 
TCGCAGGCAA GCAGTGGTTT AACCGCATTT ACCGCCGCGT TAATCCATCT GCGCAAGCGC 
ATTCCCGCTT TGGTGGAGAA TCGCTGGTGG GAAGAAGGCG ATGGCAATGT CCGTTGGCTA 
AATCGATATG CTCAACCTTT AAGCACGGAT GAGTGGCAAA ACGGGCCGAA ACAGCTGCAA 
ATTCTGCTCT CGGATCGCTT TTTGATCGCA ATTAACGCCA CGCTTGAGGT AACAGAGATT 
GTTTTACCTG CTGGGGAGTG GCACGCCATT CCCCCATTCG CTGGAGAGGA TAACCCAGTG 
ATTACGGCTG TCTGGCAGGG ACCTGCACAC GGATTGTGTG TGTTCCAGAG ATGA 

 

Protein sequence

MTQLAIGKPA PLGAHYDGQG VNFTLFSAHA ERVELCVFDA NGQEHRYDLP GHSGDIWHGY 
LPDARPGLRY GYRVHGPWQP ADGHRFNPAK LLIDPCARQI DGEFKDNPLL HAGHNEPDYR 
DNAAIAPKCV VVVDHYDWED DAPPRTPWGS TIIYEAHVKG LTYLHPEIPV EIRGTYKALG 
HPVMINYLKQ LGITALELLP VAQFASEPRL QRMGLSNYWG YNPVAMFALH PAYACSPETA 
LDEFRDAIKA LHKAGIEVIL DIVLNHSAEL DLDGPLFSLR GIDNRSYYWI REDGDYHNWT 
GCGNTLNLSH PAVVDYASAC LRYWVETCHV DGFRFDLAAV MGRTPEFRQD APLFTAIQNC 
PVLSQVKLIA EPWDIAPGGY QVGNFPPLFA EWNDHFRDAA RRFWLHYDLP LGAFAGRFAA 
SSDVFKRNGR LPSAAINLVT AHDGFTLRDC VCFNHKHNEA NGEENRDGTN NNYSNNHGKE 
GLGGSLDLVE RRRDSIHALL TTLLLSQGTP MLLAGDEHGH SQHGNNNAYC QDNQLTWLDW 
SQASSGLTAF TAALIHLRKR IPALVENRWW EEGDGNVRWL NRYAQPLSTD EWQNGPKQLQ 
ILLSDRFLIA INATLEVTEI VLPAGEWHAI PPFAGEDNPV ITAVWQGPAH GLCVFQR