| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E3743 |
|---|
| Symbol | nirC |
|---|
| ID | 6270478 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | + |
|---|
| Start bp | 3469119 |
|---|
| End bp | 3469925 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641727607 |
|---|
| Product | nitrite transporter NirC |
|---|
| Protein accession | YP_001882042 |
|---|
| Protein GI | 187732972 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2116] Formate/nitrite family of transporters |
|---|
| TIGRFAM ID | [TIGR00790] formate/nitrite transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 0.966188 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTACAG ACACTATTAA TAAGTGTGCG GCTAACGCTG CGCGCATTGC ACGCCTGTCG
GCAAATAACC CGCTCGGCTT TTGGGTCAGC TCCGCCATGG CGGGCGCGTA TGTGGGTCTT
GGGATCATCT TGATTTTCAC GCTCGGTAAT TTGCTCGACC CGTCCGTACG TCCGCTGGTG
ATGGGCGCGA CCTTTGGTAT CGCCTTAACG CTGGTGATTA TCGCCGGTTC TGAACTGTTC
ACCGGACACA CCATGTTCCT CACCTTTGGG GTAAAAGCGG GCAGCATCAG CCACGGGCAA
ATGTGGGCAA TCCTGCCGCA AACCTGGCTG GGTAACCTGG TCGGTTCCGT CTTCGTTGCC
ATGCTCTATA GCTGGGGCGG CGGTAGCCTG CTGCCGGTAG ATACCAGCAT CGTTCACTCC
GTCGCGCTGG CTAAAACCAC TGCACCGGCA ATGGTACTCT TCTTCAAAGG TGCATTGTGT
AACTGGCTGG TTTGCCTGGC AATCTGGATG GCGCTGCGCA CTGAAGGGGC GGCGAAATTT
ATCGCTATCT GGTGGTGTCT GCTGGCATTT ATCGCGTCCG GCTACGAGCA CTCTATCGCT
AACATGACGC TGTTCGCGCT CTCCTGGTTC GGCAACCACA GCGAAGCCTA CACGCTGGCG
GGTATTGGTC ATAACCTGCT GTGGGTGACG CTGGGTAATA CTTTATCAGG TGCCGTATTC
ATGGGATTGG GTTATTGGTA TGCTACGCCG AAATCGAATC GTCCGGTTGC GGACAAATTT
AATCAAACTG AAACGGCTGC CGGTTAA
|
|---|
| Protein sequence | MFTDTINKCA ANAARIARLS ANNPLGFWVS SAMAGAYVGL GIILIFTLGN LLDPSVRPLV
MGATFGIALT LVIIAGSELF TGHTMFLTFG VKAGSISHGQ MWAILPQTWL GNLVGSVFVA
MLYSWGGGSL LPVDTSIVHS VALAKTTAPA MVLFFKGALC NWLVCLAIWM ALRTEGAAKF
IAIWWCLLAF IASGYEHSIA NMTLFALSWF GNHSEAYTLA GIGHNLLWVT LGNTLSGAVF
MGLGYWYATP KSNRPVADKF NQTETAAG
|
|---|
| |