Gene SbBS512_E3407 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E3407 
SymbolgspI 
ID6271113 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand- 
Start bp3168611 
End bp3168982 
Gene Length372 bp 
Protein Length123 aa 
Translation table11 
GC content58% 
IMG OID641727296 
Productgeneral secretion pathway protein GspI 
Protein accessionYP_001881745 
Protein GI187731822 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2165] Type II secretory pathway, pseudopilin PulG 
TIGRFAM ID[TIGR01707] general secretion pathway protein I
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value0.937409 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCGCG GATTTACCTT GCTGGAAGTG ATGCTCGTGC TGGCGATTTT TGCGCTGGCT 
GCCACGGCGG TGTTACAGAT TGCCAGCGGT GCGCTGAGTA ATCAGCACGT TCTTGAGGAA 
AAAACGGTAG CGGGCTGGGT AGCTGAAAAC CAGACTGCGC TGCTCTACCT GATGACCCGT 
GAGCAGCGGG CGGTCAGGCA TCAGGGCGAG AGCGATATGG CAGGAAGCCG CTGGTACTGG 
CGAACAATCC CATTGAATAC AGGCAACGCG CTGCTCCAGG CGGTGGATAT TGAAGTCAGC 
CGTCACGAAG ACTTTTCGTC GGTGATTCAG TCACGACGCG CCTGGTTTAG CGCCGTGGGA 
GGCCAACAGT GA
 
Protein sequence
MKRGFTLLEV MLVLAIFALA ATAVLQIASG ALSNQHVLEE KTVAGWVAEN QTALLYLMTR 
EQRAVRHQGE SDMAGSRWYW RTIPLNTGNA LLQAVDIEVS RHEDFSSVIQ SRRAWFSAVG 
GQQ