Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E3403 |
Symbol | gspM |
ID | 6270184 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 3165322 |
End bp | 3165858 |
Gene Length | 537 bp |
Protein Length | 178 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641727293 |
Product | putative general secretion pathway protein YghD |
Protein accession | YP_001881742 |
Protein GI | 187734092 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3149] Type II secretory pathway, component PulM |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTACGCG ATAAATTTAT TCACTATTTT CAGCAATGGC GTGAACGCCA GTTAAGCCGT GGCGAACACT GGCTGGCACA ACACCTGGCG GGGCGTTCTC CGCGTGAAAA GGGCATGTTA CTGGCAGCGG TGGTGTTCCT GTTTAGCGTC GGATATTACG TCCTCATCTG GCAGCCGTTG AGCGAACGGA TAGTACAACA GGAGACAATG TTGCAGCAAC TGGTGGCGAT GAACACCAGA CTGAGGAGCG CCGCGCCGGA TATTATTGCG GCGCGAAAAT CCGCCACAAC AACGCCTGCG CAGGTATCGC GGGTTATCAG TGACAGTGCT TCCGCGCACT CGGTAGTCAT CAAGCGGATA GCCGAGCGTG GGGAGAATAT TCAGGTCTGG ATAGATCCGG TGGTGTTTAA TGACCTGCTG AACTGGTTAA ACGCGCTGGA TGAAAAGTAT GCGCTGCGGG TGACACAAAT TGATGCCAGT GCTGCTGAGA AGACTGGGAT GGTGAATGTG CAGCGGCTGG AGTTTGGACG GGGGTAA
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Protein sequence | MLRDKFIHYF QQWRERQLSR GEHWLAQHLA GRSPREKGML LAAVVFLFSV GYYVLIWQPL SERIVQQETM LQQLVAMNTR LRSAAPDIIA ARKSATTTPA QVSRVISDSA SAHSVVIKRI AERGENIQVW IDPVVFNDLL NWLNALDEKY ALRVTQIDAS AAEKTGMVNV QRLEFGRG
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