Gene SbBS512_E3382 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E3382 
Symbol 
ID6271948 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand- 
Start bp3147323 
End bp3148303 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content55% 
IMG OID641727273 
Producttwitching motility family protein 
Protein accessionYP_001881723 
Protein GI187731277 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT 
TIGRFAM ID[TIGR01420] pilus retraction protein PilT 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATATGG AAGAAATTGT GGCCCTTAGT GTAAAGCATA ACGTCTCGGA TCTACACCTG 
TGCAGCGCCT GGCCCGCACG ATGGCGCATT CGCGGGCTAA TGGAAGCTGC GCCGTTTGAT 
GCGCCGGACG TCGAAGAGCT ACTGCGGGAG TGGCTGGATG ACGATCAGCG GGCAATATTG 
CTGGAAAATG GCCAGCTGGA TTTTGCCGTG TCGCTGGCGG AAAACCAGCG ATTGCGTGGC 
AGCGCATTCG CGCAACGGCA TGGCATTTCG CTGGCGTTAC GGCTGTTACC TTCGCACTGC 
CCGCAGCTCG AACAGCTTGG CGCACCAACG GTATTGCCGG AATTACTCAA GAGCGAGAAT 
GGCCTGATTC TGGTGACGGG GGCGACGGGG AGCGGCAAAT CTACCACGCT GGCGGCGATG 
GTTGGCTATC TCAATCAACA TGCCGATGCG CATATTCTGA CGCTGGAAGA TCCTGTTGAA 
TATATCTATG CCAGCCAGCG ATGTTTGATC CAGCAGCGGG AAATTGGTTT GCACTGTATG 
ACGTTCGCAT CGGGATTGCG GGCCGCATTG CGGGAAGATC CTGATGTGAT TTTGCTCGGA 
GAGCTGCGTG ACAGCGAGCC AATCCGTCTG GCACTGACGG CGGCAGAAAC CGGGCATTTG 
GTGCTGGCAA CATTACATAC GCGTGGTGCC GCGCAGGCAG TTGAGCGACT GGTGGATTCA 
TTTCCGGCGC AGGAAAAAGA TCCCGTACGT AATCAACTGG CAGGTAGTTT ACGGGCCGTG 
TTGTTACAAA AGCTGGAAGT GGATAAACAG GAAGGACGCG TGGCGCTGTT TGAATTATTG 
ATTAACACTC CCGCGGTGGG GAATTTGATT CGCGAAGGGA AAACCCACCA GTTACCGCAT 
GTTATTCAAA CCGGGCAGCA GGTGGGGATG ATAACGTTTC AGCAGAGTTA TCAGCAGCGG 
GTGGGGGAAG GGCGTTTGTG A
 
Protein sequence
MNMEEIVALS VKHNVSDLHL CSAWPARWRI RGLMEAAPFD APDVEELLRE WLDDDQRAIL 
LENGQLDFAV SLAENQRLRG SAFAQRHGIS LALRLLPSHC PQLEQLGAPT VLPELLKSEN 
GLILVTGATG SGKSTTLAAM VGYLNQHADA HILTLEDPVE YIYASQRCLI QQREIGLHCM 
TFASGLRAAL REDPDVILLG ELRDSEPIRL ALTAAETGHL VLATLHTRGA AQAVERLVDS 
FPAQEKDPVR NQLAGSLRAV LLQKLEVDKQ EGRVALFELL INTPAVGNLI REGKTHQLPH 
VIQTGQQVGM ITFQQSYQQR VGEGRL