Gene SbBS512_E1520 details

Gene Information

• Locus tag: SbBS512_E1520
• Symbol: rnb
• ID: 6268376
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: -
• Start bp: 1385981
• End bp: 1387915
• Gene Length: 1935 bp
• Protein Length: 644 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 641725618
• Product: exoribonuclease II
• Protein accession: YP_001880124
• Protein GI: 187733563
• COG category: [K] Transcription
• COG ID: [COG4776] Exoribonuclease II
• TIGRFAM ID: [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases; [TIGR02062] exoribonuclease II

Plasmid Coverage information

• Num covering plasmid clones: 33
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTCAGG ACAACCCGCT GCTAGCGCAG CTTAAACAGC AACTGCATTC CCAGACGCCA 
CGCGCTGAAG GGGTGGTAAA AGCCACAGAA AAAGGCTTTG GCTTCCTGGA AGTCGACGCG 
CAAAAAAGTT ATTTCATTCC GCCGCCGCAG ATGAAAAAAG TCATGCATGG CGACCGAATT 
ATCGCGGTGA TCCACAGTGA AAAAGAACGT GAATCCGCAG AGCCAGAAGA ACTGGTTGAA 
CCGTTCCTGA CTCGTTTCGT GGGTAAAGTT CAGGGCAAAA ATGACCGTCT GGCCATCGTT 
CCTGATCATC CACTCTTAAA AGACGCCATT CCTTGCCGCG CAGCCCGTGG CCTGAACCAC 
GAGTTTAAAG AAGGCGACTG GGCGGTTGCC GAAATGCGCC GTCATCCGCT GAAAGGCGAT 
CGTTCTTTCT ATGCTGAATT GACACAATAC ATCACTTTTG GTGACGACCA CTTTGTACCG 
TGGTGGGTTA CACTTGCGCG CCATAATCTG GAAAAAGAAG CACCAGACGG CGTCGCTACC 
GAAATGCTCG ATGAAGGTCT GGTTCGTGAA GATCTGACCG CGCTGGATTT TGTCACCATC 
GACAGTGCCA GCACAGAAGA TATGGATGAC GCCCTTTTCG CTAAGGCGTT GCCGGATGAC 
AAACTTCAGC TGATTGTGGC GATTGCCGAT CCAACCGCGT GGATTGCTGA AGGCAGCAAG 
CTGGACAAAG CCGCGAAAAT TCGCGCATTC ACCAACTATC TGCCTGGCTT CAACATCCCT 
ATGCTGCCTC GCGAGCTTTC TGACGATCTC TGCTCACTGC GCGCCAATGA AGTCCGCCCG 
GTACTGGCAT GCCGCATGAC GCTCTCCGCT GATGGCGCCA TTGAAGATAA TATCGAATTC 
TTTGCCGCCA CCATCGAATC CAAAGCAAAG CTGGTGTATG ACCAGGTTTC TGACTGGCTG 
GAAAATACCG GTGACTGGCA GCCTGAAAGT GAAGCAATTG CCGAACAAGT CCGTTTGCTA 
GCGCAAATTT GCCAACGCCG CGGCGAGTGG CGTCATAACC ACGCACTGGT GTTTAAAGAT 
CGCCCGGATT ACCGCTTTAT TCTCGGTGAA AAAGGTGAAG TGCTGGATAT CGTCGCCGAG 
CCTCGTCGCA TTGCCAACCG TATCGTCGAA GAAGCGATGA TTGCCGCTAA CATTTGTGCG 
GCCCGCGTAC TGCGCGATAA GCTCGGTTTT GGCATCTATA ACGTGCATAT GGGCTTTGAT 
CCGGCGAATG CCGACGCGCT GGCAGCGTTG CTGAAAACGC ACGGTCTGCA TGTCGATGCC 
GAAGAAGTGC TCACGCTGGA CGGTTTCTGC AAACTGCGTC GTGAACTGGA CGCGCAACCA 
ACTGGTTTCC TCGACAGCCG CATTCGTCGC TTCCAGTCAT TTGCTGAAAT TAGCACTGAA 
CCCGGTCCTC ACTTTGGCCT CGGTCTGGAA GCATACGCCA CCTGGACTTC GCCGATCCGT 
AAATATGGCG ACATGATCAA CCACCGTCTG CTGAAAGCGG TTATCAAAGG CGAAACTGCG 
ACGCGCCCAC AGGATGAAAT CACTGTCCAA ATGGCCGAGC GTCGCCGTCT CAACCGGATG 
GCAGAACGTG ATGTTGGTGA CTGGTTATAC GCACGCTTCC TGAAAGACAA AGCCGGGACC 
GACACCCGTT TCGCAGCGGA AATTGTCGAT ATCAGCCGTG GCGGCATGCG TGTGCGTTTG 
GTTGATAACG GCGCTATCGC CTTTATTCCG GCACCTTTCT TACACGCTAT GCGCGATGAA 
CTGGTTTGCA GCCAGGAAAA CGGCACTGTA CAAATTAAAG GTGAAACGGT TTACAAAGTA 
ACTGACGTTA TTGACGTCAC CATTGCCGAA GTCCGCATGG AAACCCGCAG CATTATTGCG 
CGCCCGGTCG CGTAA 

 

Protein sequence

MFQDNPLLAQ LKQQLHSQTP RAEGVVKATE KGFGFLEVDA QKSYFIPPPQ MKKVMHGDRI 
IAVIHSEKER ESAEPEELVE PFLTRFVGKV QGKNDRLAIV PDHPLLKDAI PCRAARGLNH 
EFKEGDWAVA EMRRHPLKGD RSFYAELTQY ITFGDDHFVP WWVTLARHNL EKEAPDGVAT 
EMLDEGLVRE DLTALDFVTI DSASTEDMDD ALFAKALPDD KLQLIVAIAD PTAWIAEGSK 
LDKAAKIRAF TNYLPGFNIP MLPRELSDDL CSLRANEVRP VLACRMTLSA DGAIEDNIEF 
FAATIESKAK LVYDQVSDWL ENTGDWQPES EAIAEQVRLL AQICQRRGEW RHNHALVFKD 
RPDYRFILGE KGEVLDIVAE PRRIANRIVE EAMIAANICA ARVLRDKLGF GIYNVHMGFD 
PANADALAAL LKTHGLHVDA EEVLTLDGFC KLRRELDAQP TGFLDSRIRR FQSFAEISTE 
PGPHFGLGLE AYATWTSPIR KYGDMINHRL LKAVIKGETA TRPQDEITVQ MAERRRLNRM 
AERDVGDWLY ARFLKDKAGT DTRFAAEIVD ISRGGMRVRL VDNGAIAFIP APFLHAMRDE 
LVCSQENGTV QIKGETVYKV TDVIDVTIAE VRMETRSIIA RPVA