| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E1412 |
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| Symbol | oppA |
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| ID | 6272213 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | + |
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| Start bp | 1290135 |
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| End bp | 1291766 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641725514 |
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| Product | oligopeptide ABC transporter, periplasmic oligopeptide-binding protein |
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| Protein accession | YP_001880023 |
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| Protein GI | 187731549 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 0.706367 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAACA TCACCAAGAG AAGTTTAGTA GCAGCTGGCG TTCTGGCTGC GCTAATGGCA
GGGAATGTCG CGCTGGCAGC TGATGTACCC GCAGGCGTCA CACTGGCGGA AAAACAAACG
CTGGTACGTA ACAATGGTTC AGAAGTTCAG TCATTAGATC CGCACAAAAT TGAAGGTGTT
CCGGAGTCTA ATATCAGCCG AGACCTGTTT GAAGGCTTAC TGGTCAGCGA TCTTGACGGT
CATCCGGCAC CTGGCGTCGC TGAATCCTGG GATAATAAAG ACGCGAAAGT CTGGATCTTC
CATTTGCGTA AAGATGCGAA ATGGTCTGAT GGTACGCCAG TCACAGCACA AGACTTTGTG
TATAGCTGGC AACGTTCTGT TGATCCGAAC ACTGCTTCTC CGTATGCCAG TTATCTGCAA
TATGGGCATA TCGCCGGTAT TGATGAAATT CTTGAAGGGA AAAAAACGAT TACCGATCTC
GGCGTGAAAG CTATTGATGA TCACACATTA GAAGTCACCT TAAGTGAACC CGTTCCGTAC
TTCTATAAAT TACTTGTTCA CCCATCAACT TCACCGGTGC CAAAAGCCGC TATCGAGAAA
TTCGGCGAAA AATGGACCCA GCCTGGTAAT ATCGTCACCA ACGGTGCCTA TACCTTAAAA
GATTGGGTCG TAAACGAACG AATCGTTCTT GAACGCAGCC CGACCTACTG GAACAACGCG
AAAACCGTTA TTAACCAGGT AACCTATTTG CCTATTGCTT CTGAAGTTAC CGATGTCAAC
CGCTACCGTA GTGGTGAAAT CGACATGACT TATAACAACA TGCCGATCGA ATTGTTCCAG
AAGCTGAAAA AAGAGATCCC GGACGAAGTT CACGTTGATC CATACCTGTG CACTTACTAT
TACGAAATTA ACAACCAGAA ACCGCCATTC AACGATGTGC GTGTGCGTAC CGCACTGAAA
CTAGGTATGG ACCGCGATAT CATTGTTAAT AAAGTGAAAG CGCAGGGCGA CATGCCCGCC
TATGGTTACA CTCCACCGTA TACTGATGGC GCAAAATTGA CTCAGCCGGA ATGGTTTGGC
TGGAGCCAGG AAAAACGTAA CGAAGAAGCG AAAAAACTGC TGGCTGAAGC GGGTTATACC
GCAGACAAAC CGTTGACCAT CAACCTGTTG TATAACACCT CCGATCTGCA TAAAAAGCTG
GCGATTGCTG CCTCTTCATT GTGGAAGAAA AACATTGGTG TAAACGTCAA ACTGGTTAAC
CAGGAGTGGA AAACGTTCCT CGACACCCGT CACCAGGGTA CTTTTGATGT GGCCCGTGCA
GGCTGGTGTG CTGACTACAA CGAACCAACT TCCTTCCTGA ACACCATGCT TTCGAACAGC
TCGATGAATA CCGCGCATTA TAAGAGCCCG GCCTTTGACA GCATTATGGC GGAAACGCTG
AAAGTGACTG ACGAGGCGCA GCGCACAGCT CTGTACACTA AAGCAGAACA ACAGCTGGAT
AAGGATTCGG CCATTGTTCC TGTTTATTAC TACGTGAATG CGCGTCTGGT GAAACCGTGG
GTTGGTGGCT ATACCAGCAA AGATCCGCTG GATAATACCT ATACCCGGAA TATGTACATT
GTGAAGCACT AA
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| Protein sequence | MTNITKRSLV AAGVLAALMA GNVALAADVP AGVTLAEKQT LVRNNGSEVQ SLDPHKIEGV
PESNISRDLF EGLLVSDLDG HPAPGVAESW DNKDAKVWIF HLRKDAKWSD GTPVTAQDFV
YSWQRSVDPN TASPYASYLQ YGHIAGIDEI LEGKKTITDL GVKAIDDHTL EVTLSEPVPY
FYKLLVHPST SPVPKAAIEK FGEKWTQPGN IVTNGAYTLK DWVVNERIVL ERSPTYWNNA
KTVINQVTYL PIASEVTDVN RYRSGEIDMT YNNMPIELFQ KLKKEIPDEV HVDPYLCTYY
YEINNQKPPF NDVRVRTALK LGMDRDIIVN KVKAQGDMPA YGYTPPYTDG AKLTQPEWFG
WSQEKRNEEA KKLLAEAGYT ADKPLTINLL YNTSDLHKKL AIAASSLWKK NIGVNVKLVN
QEWKTFLDTR HQGTFDVARA GWCADYNEPT SFLNTMLSNS SMNTAHYKSP AFDSIMAETL
KVTDEAQRTA LYTKAEQQLD KDSAIVPVYY YVNARLVKPW VGGYTSKDPL DNTYTRNMYI
VKH
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