Gene SbBS512_E1160 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E1160 
Symbol 
ID6270119 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp1057677 
End bp1058336 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content52% 
IMG OID641725293 
Productvon Willebrand factor type A domain protein 
Protein accessionYP_001879807 
Protein GI187730403 
COG category[R] General function prediction only 
COG ID[COG4245] Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGAAC AAATCACGTT TGCCACCAGC GATTTTGCCA GTAACCCGGA ACCACGTTGC 
CCCTGCATTT TGCTGCTGGA TGTTTCTGGT TCTATGAACG GTAGACCCAT TAATGAACTT
AACGCCGGAT TGGTTACCTT TCGCGATGAG CTGCTTGCCG ATTCGCTGGC CTTAAAAAGA
GTTGAACTCG GCATTGTGAC GTTCGGCCCG GTGCATGTGG AACAACCCTT TACCAGCGCC
GCTAATTTTT TCCCGCCCAT CCTGTTTGCC CAGGGCGATA CACCAATGGG CGCTGCCATT
ACCAAAGCCC TGGATATGGT AGAGGAGCGG AAACGTGAGT ATCGTGCAAA TGGTATTTCG
TATTATCGCC CGTGGATTTT CCTGATCACC GATGGCGCTC CAACCGATGA GTGGCAGGCT
GCCGCCAACA AAGTGTTTCA GGGGGAAGAA GATAAGAAGT TTGCCTTCTT TTCCATCGGT
GTTCAGGGGG CGGATATGAA GACTCTGGCA CAAATCAGCG TTCGTCAGCC TTTGCCACTG
CAGGGATTAC AATTCCGTGA ACTGTTTAGC TGGTTATCCA GTTCGCTGCG TTCGGTTTCC
CGCTCCACGC CGGGAACGGA AGTTGTGCTG GAAGCGCCAA AAGGCTGGAC GTCAGTGTGA
 
Protein sequence
MSEQITFATS DFASNPEPRC PCILLLDVSG SMNGRPINEL NAGLVTFRDE LLADSLALKR 
VELGIVTFGP VHVEQPFTSA ANFFPPILFA QGDTPMGAAI TKALDMVEER KREYRANGIS
YYRPWIFLIT DGAPTDEWQA AANKVFQGEE DKKFAFFSIG VQGADMKTLA QISVRQPLPL
QGLQFRELFS WLSSSLRSVS RSTPGTEVVL EAPKGWTSV