| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E0132 |
|---|
| Symbol | |
|---|
| ID | 6271986 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 143579 |
|---|
| End bp | 143953 |
|---|
| Gene Length | 375 bp |
|---|
| Protein Length | 124 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641724385 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001878944 |
|---|
| Protein GI | 187732599 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0000008388 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAAAA AATTAGGTTT TGCCCTGTCT GGTCTTATGC TGGCAATGGT TGCAGGTACT
GCTTCTGCTG ATATGGATGG TGGTCAGTTA AATATCAGTG GTCTGGTTGT TGATAACACC
TGTGAAACCC GCGTTGACGG CGGTAATAAA GATGGTCTGA TCCTGCTGCA AACTGCAACT
GTTGGTGAAA TCGATGCTGG CGTGCTGAAT GACACCGTTG GCGCTAAAGC CAAACCTTTC
AGCATCACCG TTGACTGCAG CAAAGCAAAT CCGAATCCAG GTAGTACAGC TAAAATGACC
TTCGGTTCTG TTTTCTTTGG TAATAGCAAA GGAACGCTGA ACAACGACAT GTCGGTAATG
CTGCCAACTT ACTGA
|
|---|
| Protein sequence | MSKKLGFALS GLMLAMVAGT ASADMDGGQL NISGLVVDNT CETRVDGGNK DGLILLQTAT
VGEIDAGVLN DTVGAKAKPF SITVDCSKAN PNPGSTAKMT FGSVFFGNSK GTLNNDMSVM
LPTY
|
|---|
| |