Gene Saro_3494 details

Gene Information

• Locus tag: Saro_3494
• ID: 5077643
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Novosphingobium aromaticivorans DSM 12444
• Kingdom: Bacteria
• Replicon accession: NC_009427
• Strand: +
• Start bp: 101629
• End bp: 103527
• Gene Length: 1899 bp
• Protein Length: 632 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 640481218
• Product: PAS/PAC sensor hybrid histidine kinase
• Protein accession: YP_001165880
• Protein GI: 146275720
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGCTCGCGC TTGGCCACGT CCTGCGCGAC ATTGCCGAGG TGGTGACTGC CAACTCGGGA 
CGCGAAGCAT TGCGGCACCT GCTGGATGGC GAGTTCGCTG TCATCCTGCT CGACGTGTTC 
ATGCCGGACA TGGATGGTTA CGAGGTGGCG GACCTCATCC GCGAACGCAA GCAGACCGCG 
CGCATCCCGA TCATATTCCT TTCGGCGGTC AACAAGGAAA CCGAGCACCT GATGCGCGGT 
TATGCGATGG GCGCGGTCGA CTATGTGTTC AAGCCCGTCG ATCCGGTCGT GCTTGCCACG 
AAAGTCAGCG TGTTCGTCGA ACTGTTCGAG ATGCGCAAGC GGGTGGAGGC CAAGAGCCGC 
GCCGAACGCG AGCTGCGCGA GGCGGGGTTC CGTGCACAGC TCGAGCGGCT TCAGATCGAG 
CACGAACTGA ATTCCACCCG AGCGCGGCAG GCGACGGTAC TCGACGCCCT GCCGCTCGCC 
CTGTTCGAGG CGGTCGCAGA CAAGAACGGA ATGCTGATCC GCGAATTCGT GGCCGGCGAC 
CTCGCCAAGA TCGCGGGCGT GGACGCGACC TCCATCGAGC AACGGTCGCT GTGCTGGGAG 
GACCGCATCC ACCCGGAGGA TCTCCCCGCC ACGCGCCCTC CGGCAGGCTC GGACGCCGTG 
TTCTCGACCG AATACCGCTG GAACTGTGCC GACGGTTCCC AACGGTACTT CTTCGAACGC 
GCGGTACCCA TCGGATGCGA GACGGATGGG CTTGTTCGCT GGGCGGGCAC GCTGCTCGAC 
GTGACCGACC GCCGGAAGCT GGAGGCGCAG CTTCTTCAAG CCGGCAAGAT GGATGCGCTG 
GGGCGGCTGA CCGGCGGCGT CGCCCACGAT TTCAACAACG TGCTGGCAGC AGTGCTCGGC 
GGCATCACCC TGCTTGAACG CAAGGCACCG CTCGACGACC TCGGCCATCG CCTTACCGAG 
CAGATCCGCC TTGCCGCCGA ACGCGGCGCG GAACTGGTGC GGCGCATGAT GGCCTTTGCC 
CGCAAACAGG AACTCAAGCC CGTCTACCTC GCGCCCTCCG CAGTGCGCGA GGCCGTGTCC 
GGGCTGGTCG AACAAACCCT GGGCGGAACG GTGACGCTTT CCTGGGATTG CGCGGATACG 
GATCTGGTCT TCCACGCCGA CCGGTCGCAG CTCGAACTGG CGCTTGTGAA CCTGGTCATC 
AACGCGCGCG ACGCCATGCC CGAAGGCGGC TCGATCCACG TGGCGATCGC TCCCGCTGCC 
GATGCGGATC GGCTGCGCAT AGAAGTGCGC GACGAAGGCA CCGGCATCGC ACCGGGCGTG 
CTGGAACGCA TCACCGAACC GTTCTTCACC ACCAAGGGAG TGGGCAAGGG CACGGGGCTG 
GGGCTGTCGA TGGTCATGGG GTTCGTCCAG CAATCGGGCG GAACGCTCGA CATCGAAAGC 
GCGGAGGGGT GCGGCACCAC CGTGCGCATC CTCATGCCCG CCGCCCGGGC GCCGGACGCC 
GATGAGCGGG AAGCGCCGAG CGTCGAAGGC ACCCGCGCCT ACGCAGTCAG GACCGTGCTG 
GTGGTGGACG ATGACCACTC CGTCCGCACG ATAATCGCCG AACAACTCCG CGAATTCGGC 
GTCATGGTGG AAGAGGCGGC AAGCGGCGCC GATGCGGTCG AACGCGTGAT ATCCGCAAAG 
ACGCCCTTCG ACCTGCTCCT CACCGATTTC GCGATGCCGG GTCTCAACGG GTTGCAAACG 
ATAGAGCGGC TGCGCGCGCT GGGAACGGAC ATTCCCTGCG CGCTCATGAC GGGATATGCC 
GACGACCGGA TAGATACCAC CGGCGGCACG CAAACCCGGC TGCTGCGCAA GCCCATCGCC 
TTCGAGGATC TCGAAGACCT CCTGATCCAT CCGACATGA 

 

Protein sequence

MLALGHVLRD IAEVVTANSG REALRHLLDG EFAVILLDVF MPDMDGYEVA DLIRERKQTA 
RIPIIFLSAV NKETEHLMRG YAMGAVDYVF KPVDPVVLAT KVSVFVELFE MRKRVEAKSR 
AERELREAGF RAQLERLQIE HELNSTRARQ ATVLDALPLA LFEAVADKNG MLIREFVAGD 
LAKIAGVDAT SIEQRSLCWE DRIHPEDLPA TRPPAGSDAV FSTEYRWNCA DGSQRYFFER 
AVPIGCETDG LVRWAGTLLD VTDRRKLEAQ LLQAGKMDAL GRLTGGVAHD FNNVLAAVLG 
GITLLERKAP LDDLGHRLTE QIRLAAERGA ELVRRMMAFA RKQELKPVYL APSAVREAVS 
GLVEQTLGGT VTLSWDCADT DLVFHADRSQ LELALVNLVI NARDAMPEGG SIHVAIAPAA 
DADRLRIEVR DEGTGIAPGV LERITEPFFT TKGVGKGTGL GLSMVMGFVQ QSGGTLDIES 
AEGCGTTVRI LMPAARAPDA DEREAPSVEG TRAYAVRTVL VVDDDHSVRT IIAEQLREFG 
VMVEEAASGA DAVERVISAK TPFDLLLTDF AMPGLNGLQT IERLRALGTD IPCALMTGYA 
DDRIDTTGGT QTRLLRKPIA FEDLEDLLIH PT