Gene Saro_2245 details

Gene Information

• Locus tag: Saro_2245
• Symbol: rpsD
• ID: 3916561
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Novosphingobium aromaticivorans DSM 12444
• Kingdom: Bacteria
• Replicon accession: NC_007794
• Strand: +
• Start bp: 2386109
• End bp: 2386720
• Gene Length: 612 bp
• Protein Length: 203 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 640444999
• Product: 30S ribosomal protein S4
• Protein accession: YP_497516
• Protein GI: 87200259
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 0.892305
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGAAGC GCAAGGCATC GAAGTACAAG ATTGACCGCC GCCTTGGCGA GAACATCTGG 
GGCCGTCCCA AGTCGTCGGT GAACCGTCGT TCGTACGGTC CCGGCCAGCA TGGCCAGCGT 
CGCAAGAGCA AGGTGTCGGA CTTCGGCATC CAGCTCCGCG CCAAGCAGAA GCTCAAGGGC 
TACTACGGCG ACGTGACCGA AAAGCAGTTC AAGCGCACCT ACCAGGAAGC GTCGAAGATG 
AAGGGCGACA CCGGTCAGAA CCTGATCGGT CTGCTCGAGC AGCGCCTCGA CATGGTCGTC 
TACCGCGCCA AGTTCGCGCC GACGATCTTC TCGGCCCGCC AGGTCGTGTC CCACGGCCAC 
ATCTACGTCA ACGGCGTGAA GTGCAACATC GCCTCGCGTC GCGTGCGCCC CGGTGACGTG 
GTCAGCCTCG GCAAGAAGGC CAAGGAAATG GCCCTGATCG CCGAAGCCCA GGCCCTGCCC 
GAGCGCGAAG TTCCCGACTA TGTCGCCGCC GACGGCGACA AGGTGACCTT CACCCGCGTT 
CCGACGCTGG ACGAAGTGCC CTATCCGGTG AAGATGGAAC CGAACCTGGT CGTCGAATTC 
TATTCGCGCT GA 

 

Protein sequence

MSKRKASKYK IDRRLGENIW GRPKSSVNRR SYGPGQHGQR RKSKVSDFGI QLRAKQKLKG 
YYGDVTEKQF KRTYQEASKM KGDTGQNLIG LLEQRLDMVV YRAKFAPTIF SARQVVSHGH 
IYVNGVKCNI ASRRVRPGDV VSLGKKAKEM ALIAEAQALP EREVPDYVAA DGDKVTFTRV 
PTLDEVPYPV KMEPNLVVEF YSR