| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1075 |
|---|
| Symbol | |
|---|
| ID | 3916371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | - |
|---|
| Start bp | 1118771 |
|---|
| End bp | 1119778 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640443810 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_496354 |
|---|
| Protein GI | 87199097 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2064] Flp pilus assembly protein TadC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.137371 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGGA CTCCCCCCGG ACCGACGCTG CTCGGCTTCG ACGTCTACTT CGTCGGCTCG
ATTCTCGTGG CCATCGCGGC TTTCGCGGTC ATGCTGGCAA TCTACGCCGC AGTCACCGTC
CGCGATCCGA TGGCCAAACG TGTCAAGGCG CTGAACGAGC GGCGCGAACA GCTCAAGTCA
GGCATCGTCA CCGCCAACGC CCGCAAGCGC ACGAGCATCG TCCGCCGCAA CCAGACGACC
GACCAGATCC GCGGTTTCCT CGAATCGCTG AAAGTCCTGC AGGACAGTCA GCTCGCGGTC
ATCCAGCAAA AGCTGGCGCA GGCCGGCATC CGCAAGAAGG AATGGGCGGT CGCCGTCATC
CTCGGCCGAC TCGTCGGACC GATCGCGCTC GGCCTGTTCG GCGCGGCCGT GTTCTATTGG
TCGAACACCT TCCCCGACTG GAGCCCGTTC AAGCGCTTCC TCGGCTTCGC GGTCTGCCTC
ATCGCGGGCT ACAAGGGACC GGACCTCTTC ATCCAGAACC TCGTGTCCAA GCGCACGGTT
GCTGTCCGCA AGGGCCTTCC CGATGCGCTC GACCTGCTGG TGATCTGCGC CGAGGCCGGT
CTTACGGTCG ACGCCGCCTT CAGCCGCGTC GCCCGCGAAC TTGGCCGCGC CTATCCCGAA
CTGGGCGACG AGTTTGCCCT GACTGCCATC GAACTGTCGT TCCTGACCGA GCGCAGGCAC
GCCTTCGAAA ACCTTGCCTA CCGCGTCGAC CTGGACTCGG TGAAGGGCGT GGTCACGACG
ATGATCCAGA CCGAACGCTA CGGCACGCCG CTGGCATCGG CCCTGCGCGT GCTGTCGGCG
GAGTTCCGCA ACGAGCGAAT GATGCGCGCC GAGGAAAAGG CCGCGCGCCT TCCCGCAATC
ATGACGATCC CGCTCATCCT TTTCATCCTG CCGGTGCTGT TCATCGTCAT TCTCGGCCCA
GCCGCATGCT CGATCAGCGA CAGCCTCGTC AACAAGAAGC CGGTCTGA
|
|---|
| Protein sequence | MTRTPPGPTL LGFDVYFVGS ILVAIAAFAV MLAIYAAVTV RDPMAKRVKA LNERREQLKS
GIVTANARKR TSIVRRNQTT DQIRGFLESL KVLQDSQLAV IQQKLAQAGI RKKEWAVAVI
LGRLVGPIAL GLFGAAVFYW SNTFPDWSPF KRFLGFAVCL IAGYKGPDLF IQNLVSKRTV
AVRKGLPDAL DLLVICAEAG LTVDAAFSRV ARELGRAYPE LGDEFALTAI ELSFLTERRH
AFENLAYRVD LDSVKGVVTT MIQTERYGTP LASALRVLSA EFRNERMMRA EEKAARLPAI
MTIPLILFIL PVLFIVILGP AACSISDSLV NKKPV
|
|---|
| |