| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_4325 |
|---|
| Symbol | rpoB |
|---|
| ID | 5706887 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 4889899 |
|---|
| End bp | 4893330 |
|---|
| Gene Length | 3432 bp |
|---|
| Protein Length | 1143 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641273744 |
|---|
| Product | DNA-directed RNA polymerase subunit beta |
|---|
| Protein accession | YP_001539097 |
|---|
| Protein GI | 159039844 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
|---|
| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.716075 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0767673 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCAGCTT CCCGCCCTGC GAAGACCAGT CGTACGTCGA GCGCTTTCGC TCCCCGCCGA
GTTTCTTTCG GTCGGATTAC CGAACACCTC GAGGTCCCCA ACCTCCTAGC CATCCAGACC
GAGTCCTTCG ACTGGCTGGT CGGCAACGAG GCGTGGCAGG GCCGGTCGGC GGACGACCCG
CACGCACGCT CGGGTCTCGC GGAGATCCTC GACGAGATCA GTCCCATTGA GGACTTCTCT
GGCACCATGT CGCTCTCCTT CTCGGCTCCG CGCTTTGACG AGGTCAAGGC CTCGATCGAG
GAGTGCAAGG AGAAGGACCT CACCTACTGC GCGCCACTGT TCGTGACCGC GGAGTTCACC
AACAACACCA CCGGCGAGAT CAAGAGCCAG ACGGTGTTCA TGGGTGACTT CCCGATGATG
ACGCCGAAGG GCACCTTCAT CATCAACGGC ACCGAGCGCG TCGTCACCAG CCAACTTGTC
CGCTCGTCGG GTGTGTACTT CGACAAGCAG CCGGACAAGA CCTCCGACCG CGACCTGTCC
AGCGTCAAGG TCATCCCGAG CCGGGGTGCC TGGTTGGAGT TCGACATCGA CAAGCGCGAC
ACGGTCGGGG TGCGCATCGA CCGTAAGCGT CGGCAGGCCG TCACGGTGCT GCTCAAGGCG
ATCGGCTGGT CGGCCGAGCA GATCCGGGAG AAGTTCGGCT GGTCCGAGCT GATGATGACC
ACGCTCGAGA AGGACCACAT CGCCGGCCAG GACGAGGCCC TGCTCGACAT CTACCGGAAG
CTTCGCCCTG GCGAGCCGCC GACCCGGGAG AACGCCCAGA CCCTGCTCGA CAACCTCTTC
TTCAACCCGA AGCGGTACGA CGTCGCCAAG GTCGGTCGGT ACAAGTTCAA CAAGAAGCTC
GATCTGGACC TGCCGATCGA CACCGGTGTG CTCACCCAGG ACGACATCGT CGCCACCGTC
GAGTACCTCT GCCGGCTGCA CGCCGGTGAG GAGGGCTACG AGGCAGACGA CATCGACCAC
TTCGGTAACC GTCGGCTGCG TACCGTGGGC GAGTTGATTC AGAACCAGGT CCGGGTCGGC
CTGTCCCGGA TGGAGCGGGT CGTCCGCGAG CGGATGACGA CGCAGGACGT GGAGGCGATC
ACGCCGCAGA CCCTGATCAA TATCCGTCCG GTGGTGGCGG CGATCAAGGA GTTCTTCGGC
ACGTCACAGC TGTCCCAGTT CATGGACCAG ACCAACCCGC TGGCGGGCCT GACCCACCGG
CGGCGGCTGA ACGCGCTCGG CCCAGGGGGT CTGTCCCGGG AGCGGGCCGG CTTCGAGGTC
CGCGACGTGC ACCCGTCCCA CTACGGCCGG ATGTGCCCGA TCGAGACGCC CGAAGGCCCG
AACATCGGCC TGATCGGCAA CCTGTCGACG TTCGCCCGGG TCAACCCGTT CGGCTTCATC
GAGACGCCAT ACCGCAAGGT CGTCGACGGC CGGGTCACCG ACCAGGTCGA CTACCTGACC
GCGGATGACG AGGACCGGTT CGTCAAGGCG CAGGCCAACG CCCCGCTGAA CGCGGACGGC
TCGTTCGCCG AGGACCGCGT CCTGGTCCGC CGTAAGGGCG GTGAGACCGA GGACGTGGCG
CCGTCCGCCG TGGACTACAT GGACATCTCG CCGCGGCAGA TGGTCTCCGT CGGTACCGCG
ATGATCCCGT TCCTCGAGCA CGACGACGCC AACCGGGCGC TGATGGGCGC CAACATGCAG
CGTCAGGCGG TGCCGCTGGT CAAGGCCGAG GCCCCGCTGG TCGGTACCGG GATGGAGTAC
CGCGCCGCCG TGGACGCCGG CGACGTGGTG GTCGCCGAGG TCGGTGGTGT GATCGAGGAC
CTCTGCGCCG ACTACGTCAC CATCCACCAG GACGACGGCC ACCGTCGGAC GTACCTGCTG
CACAAGTTCC GCCGCTCCAA CTCCGGCTCC TGCGTCAACC AGAAGCCGGT CGTCTTCGAG
GGCGACCGTG TCGAGGCCGG TCAGGTCATC GCCGACGGCC CGTGCACCGA CGAGGGCGAG
ATGGCGCTCG GGCGTAACCT GCTCGTGGCG TTCATGACCT GGGAGGGCTA CAACTACGAG
GACGCGATCA TCCTGTCGCA GCGCCTCGTG CAGCAGGACG TGCTCACCTC GATCCACATC
GAGGAGCACG AGGTCGACGC CCGGGACACC AAGCTCGGTC CGGAGGAGAT CACCCGCGAC
ATCCCGAACG TCAGCGAGGA GATGCTCGCC GACCTCGATG AGCGGGGCAT CATTCGGATC
GGCGCCGAGG TCGTGCCCGG CGATGTCCTG GTCGGTAAGG TCACGCCCAA GGGCGAGACC
GAGCTGACTC CCGAGGAGCG GCTGCTCCGC GCGATCTTCG GTGAGAAGGC GCGTGAGGTT
CGGGACACCT CGCTGAAGGT GCCGCACGGC GAGACCGGCA CGGTCATCGG CGTTCGTACC
TTCTCCCGTG AGGACGGCGA CGAACTGCCG CCGGGAGTCA ACGAGTTGGT CCGGGTCTAC
GTCGCGCAGA AGCGGAAGAT CCAGGACGGC GACAAGCTCG CCGGCCGGCA CGGCAACAAG
GGCGTCATCT CCAAGATCCT GCCCGTTGAG GACATGCCGT TCCTTGAGGA CGGTACCCCG
GTCGACATCG TGCTGAACCC GCTCGGTGTG CCGTCTCGGA TGAACATCGG CCAGGTTCTG
GAGACGCACC TCGGCTGGGT GGCCAAGACC GGGTGGAAGG TCGAGGGTGA CGACGCCGAG
TGGAAGCGCC AGCTACAGGC GATCGGTGCC GACGAGTCCG AGCCGGACAG CAACGTGGCC
ACTCCGGTCT TCGACGGTGC CCGGGAGGAG GAGATCTCCG GTCTGCTGGC GTCGACCCGG
TCCAACCGGG ACGGCAAGCA GCTGATCGGT TCGTCCGGCA AGGCCCAGCT GTTCGACGGC
CGCTCCGGTG AACCGCTGCC GGACCCGATC GCGGTCGGCT ACATCTACAT CCTGAAGCTC
AACCACCTGG TCGACGACAA GATCCACGCA CGGTCGACCG GTCCGTACTC GATGATCACG
CAGCAGCCGC TGGGTGGTAA GGCACAGTTC GGTGGTCAGC GCTTCGGTGA GATGGAGTGC
TGGGCGATGC AGGCGTACGG TGCCGCATAC GCCCTGCAGG AGCTGCTGAC GATCAAGTCC
GATGACGTCC TCGGCCGGGT GAAGGTGTAC GAGGCGATCG TCAAGGGCGA GAACATCCCG
GAGCCGGGCA TTCCGGAGTC GTTCAAGGTG CTACTCAAGG AGCTTCAGTC GCTCTGCCTC
AACGTCGAGG TGCTCTCCAG CGACGGTGTG GCCCTGGAGA TGCGCGAGAC CGACGACGAG
GTGTTCCGGG CCGCGGAGGA GCTGGGCATC GACCTGTCCC GGCGCGAGCC GAGCTCGGTC
GAAGAGGTGT GA
|
|---|
| Protein sequence | MAASRPAKTS RTSSAFAPRR VSFGRITEHL EVPNLLAIQT ESFDWLVGNE AWQGRSADDP
HARSGLAEIL DEISPIEDFS GTMSLSFSAP RFDEVKASIE ECKEKDLTYC APLFVTAEFT
NNTTGEIKSQ TVFMGDFPMM TPKGTFIING TERVVTSQLV RSSGVYFDKQ PDKTSDRDLS
SVKVIPSRGA WLEFDIDKRD TVGVRIDRKR RQAVTVLLKA IGWSAEQIRE KFGWSELMMT
TLEKDHIAGQ DEALLDIYRK LRPGEPPTRE NAQTLLDNLF FNPKRYDVAK VGRYKFNKKL
DLDLPIDTGV LTQDDIVATV EYLCRLHAGE EGYEADDIDH FGNRRLRTVG ELIQNQVRVG
LSRMERVVRE RMTTQDVEAI TPQTLINIRP VVAAIKEFFG TSQLSQFMDQ TNPLAGLTHR
RRLNALGPGG LSRERAGFEV RDVHPSHYGR MCPIETPEGP NIGLIGNLST FARVNPFGFI
ETPYRKVVDG RVTDQVDYLT ADDEDRFVKA QANAPLNADG SFAEDRVLVR RKGGETEDVA
PSAVDYMDIS PRQMVSVGTA MIPFLEHDDA NRALMGANMQ RQAVPLVKAE APLVGTGMEY
RAAVDAGDVV VAEVGGVIED LCADYVTIHQ DDGHRRTYLL HKFRRSNSGS CVNQKPVVFE
GDRVEAGQVI ADGPCTDEGE MALGRNLLVA FMTWEGYNYE DAIILSQRLV QQDVLTSIHI
EEHEVDARDT KLGPEEITRD IPNVSEEMLA DLDERGIIRI GAEVVPGDVL VGKVTPKGET
ELTPEERLLR AIFGEKAREV RDTSLKVPHG ETGTVIGVRT FSREDGDELP PGVNELVRVY
VAQKRKIQDG DKLAGRHGNK GVISKILPVE DMPFLEDGTP VDIVLNPLGV PSRMNIGQVL
ETHLGWVAKT GWKVEGDDAE WKRQLQAIGA DESEPDSNVA TPVFDGAREE EISGLLASTR
SNRDGKQLIG SSGKAQLFDG RSGEPLPDPI AVGYIYILKL NHLVDDKIHA RSTGPYSMIT
QQPLGGKAQF GGQRFGEMEC WAMQAYGAAY ALQELLTIKS DDVLGRVKVY EAIVKGENIP
EPGIPESFKV LLKELQSLCL NVEVLSSDGV ALEMRETDDE VFRAAEELGI DLSRREPSSV
EEV
|
|---|
| |