| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_3671 |
|---|
| Symbol | |
|---|
| ID | 5707193 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 4231323 |
|---|
| End bp | 4234469 |
|---|
| Gene Length | 3147 bp |
|---|
| Protein Length | 1048 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641273093 |
|---|
| Product | SARP family transcriptional regulator |
|---|
| Protein accession | YP_001538457 |
|---|
| Protein GI | 159039204 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3629] DNA-binding transcriptional activator of the SARP family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0046189 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATGTCGG GTGTTGAGGT CAATATTCTC GGCGGCGTCG AAGTGATCGG ACCGCGCGGC
CGGACCGAGT TGGTGGGACG ACGGCATCGT GCCTTGGCGG CTGCCCTGGC CCTGCGGCCC
GGCGCGGTGC TGCCGCTGTG GCGGCTCGTC GAGGCGCTGT GGGGGGAGCG TCCACCACGA
ACCGCTGTCC GGTCGCTGCA CAGTCACGTG GCGCGGCTGC GCCTCGCGCT CGACGCGAGC
GGGTTGGGCG GAGTGCTGCA GACCCGGGAG CCGGGCTACC TACTCGCCAT CGATGCGACG
GTGGTGGACG CATGCCGCTT CGAACAGCAA ACGAGGGCGG CCCGGGACGG CCTGGCCGCC
GGAATGGCCA GTTGGGCTGC CGACGCCATG GAACAGGCGT TGGCTCTGTG GCGCGGTGAC
GCACTCGCCG ACGCGGAACC GATCGGATGG ACGGCAGCCG AGGCGGCGCG CTTGGAGGAC
CTGCGGCTTG CCGCGCGGAT GGACCTCTGC GAGGTACTGA CCTGCCTCGG CAGAACGGGT
GAGGCGCTCG GCGAGGTAGA GCGGCTGTTG GCAGCAGACC CGACCCGCGA ACGGCTGGTG
GGCCTGCGCA TGCTCGCCCT GGCGGGATCC GGGCGGCCGA CCGAGGCGCT GAACGTCTAC
CAACGGCTAC GCGTTCGGCT CGCCGATGAA CTCGGGGTAG ATCCGTCGCC CGAACTGGCA
GATCTGCACA CCGCACTGCT ACGTGGCGCC GCGCCTGGTG AGCTGCGGGC ACCGGGTACG
GTTCTCGGCC GGAACTCCGT CGCGGCGACG GGCCGGAACT CCGTCGCGGC GACGCCACCT
CGACCGGCGC AGCTTCCGGC ACCGGTGGGG TACTTCACCG GCCGCGTCGC CGAGCTGGGT
GAGCTGAGTA GTGTCATCGA AATAGGCCAC GATGACGTCC GGCCCGTGGT GCTGATCAGC
GGCCAGGGCG GGATCGGCAA GACGTCGCTT GCGGTGCAGT GGGCCGCCAG CGTCACTGAC
CGGTTTCCGG ACGGTCAGCT CTTCGTCAAT CTCCATGGCC ACAACCGGGC CGATGCGCTT
GCCCCGGCGG AGGTGGTGGC AGTCCTGCTG CGGTGCCTCG GGATACCGGA TGATCGGCTT
CCTACCGGGC TGGCCGAGCG AGTCGCCCTG TATCGCACGA TCCTCGCCGA CCAGCGCATG
CTGGTCGTGC TCGACGACGT CGGTTCCACC GAGCAGGTGT TGCCGGTGAT CCCCGGCAGC
GCCGCGAGCC TGCTCGTGGT GACGAGCCGT AACAGCCTCG TCGCTCTGGT AACGCACACC
CGGGTACACA CCATCCTCCC TGAGCTGTTC ACCCAGGACG AAGCAACCGA TCTGATGGCA
AAGATGCTCG GCACCGAGCG GGTAGGCCGA GAGCGCGACG CGGTGGCCGG ACTCGCCAAG
CTGTGCGGTT GGCTTCCGCT GGCGTTACGG ATCGCGGCGG CAAAGCTCGC GCTGCGCCCG
GCTCAGCCCA TCGAGGTGCT CGTCGAGGAG TTGTCTGGCG GCGACCGGTT GGCCAACCTC
TCCGTCGAGA ACGGCAGCCG CGACGTCAGT GTGGTGTTCG CCAGTGCGTA CCAATCGCTG
TCGGTACCCG CGATGCGGCT GTTCCGGCTG CTCGGCCTGC ATCCCGGGCC GCACCTCGGC
GCAGCACTGG CTGCCGCGCT CTGCGGCCTG CCCGCCGACG TGCAGCGACA TGCGTTGGCC
GAACTCGTCG CGGCACACTT GGTTGCCGAG CCACGGCCCG GCCGATACCA GTTCCACGAC
TTGGTCCGGC TCTTCGCGCG GCGGTGTGCG CTTGCCGACG AGCCCGCGAG TACGCGTGCC
GAGGTGGCCG AGAAGTTGCT CGACTGGTAT CTCGTCGGTG CCGCAACGGC CACCCAGGTG
CTCGACAGCA ATCTCGACCG CGTAACCGCG ACGCTGCGTC ATCCGGCTCC GGAACTTCCC
TTTTCGGCCA CTCGCGAGCA CACGATCGCG TTTCTCCACT CTGAACGCGA CAATCTACTG
CCGATCGTGC GGTACGCGGT GGAGCACGAC CAGCCCGCTG CGGCATGCCA GCTGACCTAC
CTACTGACCA GCTACTTCGA CGTACATGGC GACTGGTCCG AGCGGGTGGT GATGTGCCAG
CACGCGGTCC GGGCCGCCCG TCGGCTCGGC GATCCGGTGC TCGAAGCCGA GATGCATCGG
GCGCTCGGCG TGGCCTACCG CACGACACAC CAGCTCAGCC AGGCACTCGA CAGCCACCAC
CACGCGTTGG CGCTGTTGCG GCCGCTCGGG GACAACCGCG GATTGGCGTA CGTCTACAAC
AACATCGGCG GCGCGTTCGT AGAAATGCGT CGTTTCACCG CTGCGATCGA GGCGTACCAG
ACCGCGCTGC GGCTGCACGG CCACTGTGGC AACCGGGCCG GCGCGGCGAC CGCCCAGCGC
AACCTCGGAT ACGTCCACGT CCGGATGGGC TGTGCCGATC TCAGCTTCGC CCCGCTGGAC
GCGGCGTTGG CCACCAGCCG GGCCATCGGT CTCCACCGGC TCGAGGCGAG CACGTTGAAC
AGCCTCGGCG AGGCGCACCT GCAGCAGCTG CGACACGATC GGGCGCTCGA CTGCTTCCAC
GAAGCCTTCG CCGTGAGCCG CAAAGCCGGC GATCGCCGCT ACCAGATGGT CGCGCTGGGC
GACCTCGGAC GCACCTACCT GGCCCACGGC GACCCCGCGT CCGCTGTAGA TCACTTTAAT
CGGGCACTGG CGATGAGCCG GAGCCTGGGT CATCGGCACA TCGAGGCACG CACCCTCAAC
CAGCTCGGCG AAGCGCAGCT GCGCCTGGCG AACCTCGACG AGGCCCGCCG ATGCCTGACG
GCAAGCGCCA GCCTTCGGCG GGCCGTGCCC GACCTGTACG AGCAGGCACA CGTGCAGCGC
AACCTCGGCG ACCTTGCGGA GCTGACGGGT AGCCGAGGTG CCGCAGAACG CCACTGGTCA
ACGGCTGTTC GCCTCTACCA CGAGGCGAGC GCGACCGATG AGGCGGAGCA GCTCGCCGGC
AAGCTGACCG ACGAAACCGA CCTGGGTGCC GTCCCCGTTC CCCCACGATC GCGTCAGTCG
TCGTCGACGA TGCCCATGGC CACCTGA
|
|---|
| Protein sequence | MMSGVEVNIL GGVEVIGPRG RTELVGRRHR ALAAALALRP GAVLPLWRLV EALWGERPPR
TAVRSLHSHV ARLRLALDAS GLGGVLQTRE PGYLLAIDAT VVDACRFEQQ TRAARDGLAA
GMASWAADAM EQALALWRGD ALADAEPIGW TAAEAARLED LRLAARMDLC EVLTCLGRTG
EALGEVERLL AADPTRERLV GLRMLALAGS GRPTEALNVY QRLRVRLADE LGVDPSPELA
DLHTALLRGA APGELRAPGT VLGRNSVAAT GRNSVAATPP RPAQLPAPVG YFTGRVAELG
ELSSVIEIGH DDVRPVVLIS GQGGIGKTSL AVQWAASVTD RFPDGQLFVN LHGHNRADAL
APAEVVAVLL RCLGIPDDRL PTGLAERVAL YRTILADQRM LVVLDDVGST EQVLPVIPGS
AASLLVVTSR NSLVALVTHT RVHTILPELF TQDEATDLMA KMLGTERVGR ERDAVAGLAK
LCGWLPLALR IAAAKLALRP AQPIEVLVEE LSGGDRLANL SVENGSRDVS VVFASAYQSL
SVPAMRLFRL LGLHPGPHLG AALAAALCGL PADVQRHALA ELVAAHLVAE PRPGRYQFHD
LVRLFARRCA LADEPASTRA EVAEKLLDWY LVGAATATQV LDSNLDRVTA TLRHPAPELP
FSATREHTIA FLHSERDNLL PIVRYAVEHD QPAAACQLTY LLTSYFDVHG DWSERVVMCQ
HAVRAARRLG DPVLEAEMHR ALGVAYRTTH QLSQALDSHH HALALLRPLG DNRGLAYVYN
NIGGAFVEMR RFTAAIEAYQ TALRLHGHCG NRAGAATAQR NLGYVHVRMG CADLSFAPLD
AALATSRAIG LHRLEASTLN SLGEAHLQQL RHDRALDCFH EAFAVSRKAG DRRYQMVALG
DLGRTYLAHG DPASAVDHFN RALAMSRSLG HRHIEARTLN QLGEAQLRLA NLDEARRCLT
ASASLRRAVP DLYEQAHVQR NLGDLAELTG SRGAAERHWS TAVRLYHEAS ATDEAEQLAG
KLTDETDLGA VPVPPRSRQS SSTMPMAT
|
|---|
| |