| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_3292 |
|---|
| Symbol | |
|---|
| ID | 5706909 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 3803912 |
|---|
| End bp | 3804556 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641272719 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001538086 |
|---|
| Protein GI | 159038833 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00125933 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGCCGCTGC TCCTTCTCGA CCTGGACAAC ACCCTGCTCG ATCGGGAAAA CCTCTTCCGA
TCCTGGGCTG AGCGCTTCCT GGTCAAGGTC GGCGCGCCAC CAGGCGACCT CGACTGGCTG
CTCGCGGTCG ACGGGGACGG GCTGACCGAC CGGTGGGATG TGGCCGACGC GATCCGTAAC
CGCTATGCAT TGAGCGTCCG GTCGGTCGAT CTGGTGGAGG AACTGCACGA CGGCACGCTT
GCCGACACCC GACTGGATCC ACTGGTGGCC TGCGCGCTAC GGATCGCCGG CGAGGTCGGT
TGGATGCCGG TGGTGGTGTG CAACGGAGCG GTGCGGCAGC AGGAGGGCAA GATCCGGCGG
ACCGGGTTGG ACCGGTACAT CGCCGACTGG GTCATTTCCG AGGAAGTCGG CGTCAGTAAG
CCGAACCCGC GGATCTTCGC GTTGGCCGCG CAGCGCGTCC GCATGCCGCT GCGGGGCGCC
TGGGTGGTCG GCGACGGCCC GGAGGCGGAC ATCGGCGGTG CCGCGGCAGC GGGTCTGCCC
AGCGTCTGGC TGCACCGGGG ACGTACCTGG AATGACAGTC GGTTCGCCCC GACCTACACC
GCCGACGGCC CGATCGCCGC CGTCGCCGCC GTGCTCGCGG CATAA
|
|---|
| Protein sequence | MPLLLLDLDN TLLDRENLFR SWAERFLVKV GAPPGDLDWL LAVDGDGLTD RWDVADAIRN
RYALSVRSVD LVEELHDGTL ADTRLDPLVA CALRIAGEVG WMPVVVCNGA VRQQEGKIRR
TGLDRYIADW VISEEVGVSK PNPRIFALAA QRVRMPLRGA WVVGDGPEAD IGGAAAAGLP
SVWLHRGRTW NDSRFAPTYT ADGPIAAVAA VLAA
|
|---|
| |