| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_1409 |
|---|
| Symbol | |
|---|
| ID | 5707686 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 1630451 |
|---|
| End bp | 1631227 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641270919 |
|---|
| Product | LexA family transcriptional regulator |
|---|
| Protein accession | YP_001536300 |
|---|
| Protein GI | 159037047 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) |
|---|
| TIGRFAM ID | [TIGR00498] SOS regulatory protein LexA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0567372 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00000225039 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGACCAAGG ACCGGGCCAG CCGGCCGAAG AACCCGCAGC AGATCACCGA AGCGGGTACG
CGCCGCGGAC GTGCCACCCG TGGCCGCACC GGTTCACCCG CTGTGCGCCC GGTCACACCC
GTCGTCGGTA CGTACCCCGA ACCGGCGACG GTCGACCTGA CCGCCCGACA GCGCCGGATC
CTGGAGTTCA TCCGCACCTG GGTGGAGCGG CACGGCTACC CGCCGAGCGT GCGCGAGATC
GGCGAGGCCG TCGGTCTGGT GTCGCCGTCC AGCGTCGCCT ACCAACTCAA GGAGTTGGAG
AAGAAGGGCT TCCTGCGCCG CGACCCGAAC CGGCCGCGCG CCGTTGACGT CCGGCCCCCC
GGCGACCCAC TCGACGACGA GGCGACGCGC TCCCACCGAC CGACTCCGGC GTACGTACCG
ATGCTGGGCC GGATCGCCGC CGGTGGTCCG ATCCTCGCCG AACAGGCCGT CGAGGACGTC
TTCCCACTCC CCCGCGAACT GGTCGGGGAG GGAGAGGTCT TCATGCTGCA GGTCAAGGGC
GACTCGATGC TGGACGCCGC GATCTGCGAC GGCGACTGGG TGGTCGTCCG GCAGCAGCCC
ACCGCCGAAT CCGGCGACAT CGTGGCAGCC ATGCTGGACG GCGAGGCAAC GGTGAAGACC
TACCGCCGGC GGGACGGGCA CGTCTGGCTG ATGCCGCAGA ACCCGGCGTT CGACCCGATC
CCTGGCGACG ACGCCACCAT CATGGGCCGA GTCGTCACGG TGCTGCGCCG CATCTGA
|
|---|
| Protein sequence | MTKDRASRPK NPQQITEAGT RRGRATRGRT GSPAVRPVTP VVGTYPEPAT VDLTARQRRI
LEFIRTWVER HGYPPSVREI GEAVGLVSPS SVAYQLKELE KKGFLRRDPN RPRAVDVRPP
GDPLDDEATR SHRPTPAYVP MLGRIAAGGP ILAEQAVEDV FPLPRELVGE GEVFMLQVKG
DSMLDAAICD GDWVVVRQQP TAESGDIVAA MLDGEATVKT YRRRDGHVWL MPQNPAFDPI
PGDDATIMGR VVTVLRRI
|
|---|
| |