| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_0952 |
|---|
| Symbol | |
|---|
| ID | 5704488 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 1075870 |
|---|
| End bp | 1076865 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641270469 |
|---|
| Product | RNA polymerase factor sigma-70 |
|---|
| Protein accession | YP_001535857 |
|---|
| Protein GI | 159036604 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02960] RNA polymerase sigma-70 factor, TIGR02960 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0742081 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGCGACG ATCGGTCCGT GGTTGCCAGT ATCGACTCTG CCTTGCTGTC GGCGGCGCAA
GCCGGGGATT CGGACGCGTT CGCCGCTGTG GTCGACCCGT TCCAAGGGGA GTTGCACGCA
TACTGCTATC GGATGCTGGG TTCCGTCCAT GACGCCGATG ACGCCGTTCA GGAGACGCTG
GTCCGGGCCT GGCGGGCGTT TGACCGATTT GAGCCTCGTG GATCAATGCG GGCTTGGCTG
TACCGGATCG CCACCAACCG GTGCCTGTCG ATTCTCAACG GGCGAGGCCG CCGGGAACTG
CCGGCCGATC TCGAGCGCAT CGCGGGAGGC GACACCGAGA TCTCCTGGCT GGAGCCTTAC
ACGGACGAGC GGCTGGGCCC GGAGCAACGC ACTGTCGCGA GGGAGAGCAT CGAGCTGTCG
TTCGTTGCCG CGGTGCAGCG ATTGACCGGT AGGCAGCGTG CGGTGCTCCT GTTGCGGGAG
GTGCTGGGCT TCACCGCCCG CGAGGTGGCT GACCAGCTCG ATACCACCGT GGCCGCCGTC
AACAGCGCGC TGCAGCGCGC CCGCGCAGTT CTCGATCCGG GACTGCCCAC CGCGACCCAG
CAGGCGACGA TGCGCCAGAT GGGTGACACC GCGGTTCGGG ACCTGGCCCG ACGGTACGCA
CAGGCGTGGG AGGCGGCCGA TGTCGACACC ATCGTTTCGA TGCTGGTCGA GGACGCCCGC
TACTCTATGC CGCCGGTGCC GACCTGGTTC ACCGGCCGGA AGGCCATCTG CGACTTTCTG
CTCAGCGGCC CGCTGACGTG TGGCTGGCGG TTCGTGGCGA CCGAGGCGAA CAGTCAGCTT
GCGTTCGGCA CGTATCGCTG GGACAGCGAC CACGCCGCTT ACCGTCCCTG CGGGCTGGAC
GTCCTGACAC TGCGTCGAGA CGGCATCGCG GAGGTCGTGT CCTTCCTCGA AGCCGACTTC
GCCGCGCACG GCCTGCCACC CAGCCTGCCG AACTGA
|
|---|
| Protein sequence | MCDDRSVVAS IDSALLSAAQ AGDSDAFAAV VDPFQGELHA YCYRMLGSVH DADDAVQETL
VRAWRAFDRF EPRGSMRAWL YRIATNRCLS ILNGRGRREL PADLERIAGG DTEISWLEPY
TDERLGPEQR TVARESIELS FVAAVQRLTG RQRAVLLLRE VLGFTAREVA DQLDTTVAAV
NSALQRARAV LDPGLPTATQ QATMRQMGDT AVRDLARRYA QAWEAADVDT IVSMLVEDAR
YSMPPVPTWF TGRKAICDFL LSGPLTCGWR FVATEANSQL AFGTYRWDSD HAAYRPCGLD
VLTLRRDGIA EVVSFLEADF AAHGLPPSLP N
|
|---|
| |