| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_0180 |
|---|
| Symbol | |
|---|
| ID | 5706337 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 192672 |
|---|
| End bp | 195074 |
|---|
| Gene Length | 2403 bp |
|---|
| Protein Length | 800 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641269706 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_001535106 |
|---|
| Protein GI | 159035853 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3620] Predicted transcriptional regulator with C-terminal CBS domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.476576 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00129717 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGCAGATC AACTCGGATT GCTGTTGCGT CGGCTACGAA ACCAAGCGGG ATTGACACAG
GAACAGGTCG CGGAACGGTC CGGGGTGAGT GTCCGCACCA TTCGCCGCCT GGAATCGGCG
AGGAACATCG ATCACCGCCT GGGCACCCTG AACCTGTTGG CTGACGCGCT GGAACTTGGA
TCCGAGGATC GCGAACTCCT CGCCACCATG CTCGCGAGAA CGAGCACCCC GCCCACGTTC
GCGGTTCACG CTGCTTCCAC GGAGACTCGG CCAACTGCAT CGGCCAGCGG GCCGCCCAGG
GCGCCATCGA GGCAGACGTC CGTCCTGGTG CCGGCGCGTG CCGTGCTGGA CGCTGCTGAG
ACGTTGGCGA GGGAAGCCAA ACGTCGGTGG CAGCGCGAGG AGGAGCAGCG CCAGGTCCAC
GACCCGTTTC CGTTGCCGCT GTGCTGGCAG CCGGCCCCCG CGCAGCTGGT CGACTACGCG
GCGAACGTCC AGCGCCTTCC ACCAGGAGCT ACCCCACAAC TGGATCTCAG TGGTGATATG
GGCAGTATCG CCGAGGTCTA CCGAAGGATC CGGTCCGGCC GGTTGGTGAT CCTGGGCCGG
GCGGGTTCGG GTAAGTCGAT CATGTTGATC AGGCTCGTCC TGGACTCGCT CGCGGCCTTC
ACCCTCCCCG AGCGGGTGCC GATGATCTTC AACCTCGGAT CCTGGGACGC GACAGCCATC
ACCTTGCGGG ACTGGCTGAT CGGTCAGCTG TTGCGTGACC ACCCGCACCT GGCCCGCAGG
GCACCCGGCG GTCCGACGTT GGCCGCCGCA CTGGTCGACG CTGATCTCAT CCTGCCCATC
CTGGACGGGT TCGACGAGAT CGCCGACGGC CTGCGGCGCG AGGCGCTCGA AGCGTTCAAC
GCGACCTCAC TGCCGCTTGT GCTGACCAGC CGCCGTGACG AGTACGCCGA GGCGGTGCGC
GGAGCCGGGG CCCCGCTGAA CTGGGCGGCC GGTATCGAGC TCGTGGACCT CACCCTCGAT
GACCTCGCGG CCTACCTGCC CCGGACCGCC AGGCAGGCCG GCCGCGACGA CACCGTAGCG
GTGTGGGATC CCGTCCTGAA GCTGCTGCAG GCCACGACGT GCCCGGCGAG CGTGAACCTC
ACGAGAGTAC TGTCCACTCC TCTGATGGTC GTCCTGGCGC GGACGATGTA TAGCGAGACA
CCGGAACGGG ATCCGGCCGA ACTGCTCGAC ATAACGCGGT TTCCCAGCGC GAAGTCCGTC
GAGGAGCATT TACTGGCAGG ATTTGTCCCG ACGGTCTACC GACCGTCCGT CCCCGACCGG
GAGGCTGGCG GCTTCCGGCA GCGGACCTGG AACCCGCACC ACGCAGAGCG TTGGCTCGGC
TACCTCGCCC ATCAGTTGGT ACGGCACGGC CAGGACCGGC GGGATCTCGC GTGGTGGCAG
ATCGGCGACT CCCTTCGTCG TTCGACGCGT ATCGGGACCG CAACGCTGGT TTCTGCGCTG
TGCACTGCCG TGTCGGCCTG GATGACCGGG CTGGTCGCCG GGCAGGTCGA CCCCGAGCAG
ATCCTGGTGG AAGGGGCCAT GATGGGGCTG TCGGCCGGCC TCGCCTTCGG AGCTGTCTAT
GCGGCGATAA CCGCCTTCGG CGGCACCTTC CAGCCGACCC ACGTGCGGCT GCGACTGCGT
CGCCGCCACA GCGTCGTCGC CCGCCCGCCA ATCCAGACAT TCACCGTCAG GTTCGCAGTC
GTCCTGCTGG GCGGGTTCGT CATGGGCGTT GGAAGCGCCT GCGCCACCGC CCTGGTACGC
GCACGGTACT GGGAAACCCC GCTCGCGAGC CTTGAGGTGA TCAGGGCGAC CCTCATCAAC
ATGCTGGTCT TCGGACTGAT CTTCGGTTTG GCGGCCGGAC TGGTGTTCGG GCTCCTGGCC
GCGTTGGAGG TGCCGGTGGA CGTTTCCTTC GTCGCCACTC CGGTCAGCCT ATTGTCCGCG
AACCGTGCGA CCGTGAGCCA ACAGATCCTC TTCCTTGCCC CCGTTCTCGC CCTGACAATC
GCCGTCGGTG GACGGCTGGT CGTCGACCTG CTCGAGGGAG GCGTCCTCGG AGAGCTGAGA
TGGGCCTGGC CCGACGCGTT TCTCATCGGG GCTGCCGGGG GGCTGGGAGG CGCATTGTCG
TACATGTTCT GCTTCACCGC CTGGGGGCAG TGGGTGATCC TGACCCGGGT GTGGCTACCG
CTGACTGGCC GGCTGCCCTG GAACACGATG GCCTTTCTGG AAGGCGCCTA CCGACGGGGC
GTGCTCCGTC AGACCGGCGC GGTTTACCAG TTCCGCCACG TTCGGCTTCA ACAGCACCTG
AGTCACTCGT ACTGCGAGCG GCGGCGGAGA AGTCGACGAA CTCCCGTTCA CTCCGAGGGC
TGA
|
|---|
| Protein sequence | MADQLGLLLR RLRNQAGLTQ EQVAERSGVS VRTIRRLESA RNIDHRLGTL NLLADALELG
SEDRELLATM LARTSTPPTF AVHAASTETR PTASASGPPR APSRQTSVLV PARAVLDAAE
TLAREAKRRW QREEEQRQVH DPFPLPLCWQ PAPAQLVDYA ANVQRLPPGA TPQLDLSGDM
GSIAEVYRRI RSGRLVILGR AGSGKSIMLI RLVLDSLAAF TLPERVPMIF NLGSWDATAI
TLRDWLIGQL LRDHPHLARR APGGPTLAAA LVDADLILPI LDGFDEIADG LRREALEAFN
ATSLPLVLTS RRDEYAEAVR GAGAPLNWAA GIELVDLTLD DLAAYLPRTA RQAGRDDTVA
VWDPVLKLLQ ATTCPASVNL TRVLSTPLMV VLARTMYSET PERDPAELLD ITRFPSAKSV
EEHLLAGFVP TVYRPSVPDR EAGGFRQRTW NPHHAERWLG YLAHQLVRHG QDRRDLAWWQ
IGDSLRRSTR IGTATLVSAL CTAVSAWMTG LVAGQVDPEQ ILVEGAMMGL SAGLAFGAVY
AAITAFGGTF QPTHVRLRLR RRHSVVARPP IQTFTVRFAV VLLGGFVMGV GSACATALVR
ARYWETPLAS LEVIRATLIN MLVFGLIFGL AAGLVFGLLA ALEVPVDVSF VATPVSLLSA
NRATVSQQIL FLAPVLALTI AVGGRLVVDL LEGGVLGELR WAWPDAFLIG AAGGLGGALS
YMFCFTAWGQ WVILTRVWLP LTGRLPWNTM AFLEGAYRRG VLRQTGAVYQ FRHVRLQQHL
SHSYCERRRR SRRTPVHSEG
|
|---|
| |