| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3623 |
|---|
| Symbol | |
|---|
| ID | 4605870 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 4262595 |
|---|
| End bp | 4263158 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639783044 |
|---|
| Product | putative chorismate--pyruvate lyase |
|---|
| Protein accession | YP_929495 |
|---|
| Protein GI | 119776755 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG3161] 4-hydroxybenzoate synthetase (chorismate lyase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.146311 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGTGA CCAGTCTCAG TTTTCCTTAC GGTGAATCCA TTTGTTGGTA TTCGCCGGAT
GAGCTGGACA GGTTGCCCGA CGGTGCCCTT GCCGATTGGC TACTTGCCAG TGGCAGCCTG
ACGGCCAGGT TAAGAGCCCA CTGCAGCCAG TTTGAGGTCC GGGTACTCGG TGAAGCCATG
CTGCCAGGCC TGCCCGGCGA ACCCCAATTA CCCCATACCT GGGTGCGGGA AGTCTTGCTT
ATCCTCGACG GTACTCCCTG GGTGTTCGCA CGCACTCTGG TGCCAGAAGC CCTGCTGACC
CGCTGCGGAG ATGAATTAAC CGCACTGGGA GACAGACCCC TTGGCGAACT CCTCTTTTCC
AGCAACCTCT TCACACCGGG CCGAATCGAA ATCGCTGGCT TTCATTCCTG CGGCACCCTG
GCTCGCCTCG CCGAGAGCCT GGGACAAAAT GTCCATGGTC GCCTTTGGGG CCGTCGTCGC
TACTTCGAGC GGGAGGGGGA CGAGCTGATT GTCAGCGAAA TATTTCTCCC TGCTGCCATG
GATTATATCC TCGGACCTCA ATAA
|
|---|
| Protein sequence | MSVTSLSFPY GESICWYSPD ELDRLPDGAL ADWLLASGSL TARLRAHCSQ FEVRVLGEAM
LPGLPGEPQL PHTWVREVLL ILDGTPWVFA RTLVPEALLT RCGDELTALG DRPLGELLFS
SNLFTPGRIE IAGFHSCGTL ARLAESLGQN VHGRLWGRRR YFEREGDELI VSEIFLPAAM
DYILGPQ
|
|---|
| |