| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3420 |
|---|
| Symbol | |
|---|
| ID | 4605667 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 4049302 |
|---|
| End bp | 4049853 |
|---|
| Gene Length | 552 bp |
|---|
| Protein Length | 183 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639782840 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_929292 |
|---|
| Protein GI | 119776552 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.726573 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACTGCA GCGCCTGTAA ACACGGTAGC CTGGTTCCTA CCCGGCTCGA CAACCTCTTC
TCTGCCCACC GTTGTAATCA CTGTGGCGGC CACTGGGTTC TGATTGACGA CTTTGTCACC
TGGAAGCAAG CCAATCCCGA CACCGAATTT GAGGCCATTA CGGCCGTAGA AGACAGTGAA
GATAGCCCCA TGGCGCTGTT TTGCCCAATG AGCCATACCC TGATGCGCAA GCTTAAAATC
AGCACAGACA CAGACCACAG GCTCGACTAC AGCGCCGCTG TGGGTGGCGT ATGGCTGGAT
AAGGGCGAAT GGCCATTGCT TAAGTCCATG GGGCTTGCCA GCTGCCTGAA TTTACTGGTG
ACTCAGGAGT GGCAAAATCG CTTAAAACAA AGCCAAACTC AGGCCAATTT TGGCGAACAC
TACCGCCGCA AGTTTGGTGA CAGCACCTAC ACTGAACTTA AAAGGATCCG CGACTGGTTA
CAGGGCCAGC CCAATAAAGC CGAGCTCAAG AGTTACCTGC TGGCAGACGA TCCCTACAGC
ACCAAACGAT AA
|
|---|
| Protein sequence | MHCSACKHGS LVPTRLDNLF SAHRCNHCGG HWVLIDDFVT WKQANPDTEF EAITAVEDSE
DSPMALFCPM SHTLMRKLKI STDTDHRLDY SAAVGGVWLD KGEWPLLKSM GLASCLNLLV
TQEWQNRLKQ SQTQANFGEH YRRKFGDSTY TELKRIRDWL QGQPNKAELK SYLLADDPYS
TKR
|
|---|
| |