| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3415 |
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| Symbol | |
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| ID | 4605662 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 4042462 |
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| End bp | 4044276 |
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| Gene Length | 1815 bp |
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| Protein Length | 604 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639782835 |
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| Product | virulence regulator BipA |
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| Protein accession | YP_929287 |
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| Protein GI | 119776547 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG1217] Predicted membrane GTPase involved in stress response |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR01394] GTP-binding protein TypA/BipA |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.349187 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTAGAAA ATTTGCGTAA CATCGCCATT ATTGCCCACG TTGACCATGG TAAAACCACC
CTGGTTGACA AGCTGCTCTC CCAGTCCGGC ACCCTGGAAA GCCGTGGCGA AGCCACCGAG
CGCGTGATGG ACTCCAATGA CCTGGAAAAA GAGCGTGGCA TCACCATTCT GGCGAAGAAC
ACTGCCATCA AGTGGAATGA CTACCGTATT AACATCGTAG ACACACCCGG CCACGCCGAC
TTCGGTGGTG AGGTTGAGCG TGTACTGTCT ATGGTGGACT CTGTATTGCT GCTGGTGGAT
GCCGTTGATG GCCCAATGCC GCAAACCCGT TTCGTAACCA AGAAGGCATT TGCCCAGGGC
CTCAAGCCTA TCGTGGTTAT CAACAAAGTT GACCGTCCGG GCGCCCGTCC TGATTGGGTA
ATAGATCAGG TATTTGACCT GTTCGACAAT CTGGGTGCCA CCGACGAACA GCTGGACTTC
CCTATCGTAT ACGCCTCGGC CCTGAACGGC TTTGCCACTC TGGATCCCGA TGAGCCAAGC
GAAGACATGA CTCCTCTGTT CCAGACCATC GTTGAAAAAG TGTCTCCTCC GGATGCTGAC
GCCGAAGGCG CCTTCCAGAT GCAGATCTCT CAGCTGGACT ACAACAGCTA CGTGGGCGTT
ATCGGCGTAG GCCGTATCAA GCGCGGTAGC GTCAAAACCA ACCAGCAGGT CACTGTTGTC
GGTGCCGACG GTAAAACCCG TAACGGTAAA ATCGGCCAGG TACTGGGTTA CATGGGCCTT
GAGCGTCACG AAGTGGCCAC CGCCAACGCC GGTGACATCG TTGCCGTCAC AGGTCTGGGT
GAGCTGAAGA TTTCTGACAC CATCTGTGCC GCAGGTAACG TTGAGGCTCT GCCTCCTCTG
TCTGTAGACG AGCCAACCCT GACCATGACC TTCCAGGTAA ATACCTCTCC GTTTGCCGGT
AAAGAAGGTA AGTACGTGAC TTCACGTAAC ATTCTTGAAC GTCTGCAACA GGAACTGGTA
CACAACGTGG CCCTGCGTGT AGAAGAAACC GACAGCCCTG ACCGTTTCCG CGTGTCTGGC
CGTGGTGAAC TGCACCTGTC TATCCTGATT GAAAACATGC GCCGTGAAGG TTACGAGCTG
GCGGTATCCC GTCCGGAAGT AATCATCAAG GAAATCGACG GTGAGAAGTG CGAGCCATAC
GAGCAGCTGA CCGTTGACGT GGAAGAAGAT CATCAGGGCA CTGTGATTGA AAAGCTGGGT
ACCCGTAAGG CTGACATGAA AGACATGCAG TTGGACGGCA AAGGTCGTGT CCGTATCGAC
TTTGTTATCC CAAGCCGTGG CCTGATTGGT TTCCAAACCG AGTTTATGAC TGCGACCTCT
GGTACCGGTC TTTTGTACCA CACGTTCGAC CACTACGGTC CATACAAGGG TGGCGACATC
GGTCAGCGTA ACAACGGTGT ACTGATCTCC AATGCTACCG GTAAGGCTCT GACCTTCGCC
CTGTTCGGTC TGCAGGATCG TGGTCGTCTG ATGATTGGCC ATGCCGCTGA AGTGTACGAA
GGCCAGGTGA TCGGTATCCA CAGCCGTTCA AACGACCTGA CCGTAAACTG CCTCAAGGGC
AAGCAGCTGA CCAACATGCG CGCCTCTGGT ACCGACGAGG CTCAGGTGCT GACTCCGCAC
ATCCAGATGA CCCTGGAACA GGCGCTGGAG TTCATCGATG ATGACGAGCT GGTAGAAGTG
ACTCCGCTGA GCATCCGCGT ACGTAAGAAG TTCCTGACTG AGAACGACCG TAAGCGTGCC
AGCCGTCAGG GCTAA
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| Protein sequence | MLENLRNIAI IAHVDHGKTT LVDKLLSQSG TLESRGEATE RVMDSNDLEK ERGITILAKN
TAIKWNDYRI NIVDTPGHAD FGGEVERVLS MVDSVLLLVD AVDGPMPQTR FVTKKAFAQG
LKPIVVINKV DRPGARPDWV IDQVFDLFDN LGATDEQLDF PIVYASALNG FATLDPDEPS
EDMTPLFQTI VEKVSPPDAD AEGAFQMQIS QLDYNSYVGV IGVGRIKRGS VKTNQQVTVV
GADGKTRNGK IGQVLGYMGL ERHEVATANA GDIVAVTGLG ELKISDTICA AGNVEALPPL
SVDEPTLTMT FQVNTSPFAG KEGKYVTSRN ILERLQQELV HNVALRVEET DSPDRFRVSG
RGELHLSILI ENMRREGYEL AVSRPEVIIK EIDGEKCEPY EQLTVDVEED HQGTVIEKLG
TRKADMKDMQ LDGKGRVRID FVIPSRGLIG FQTEFMTATS GTGLLYHTFD HYGPYKGGDI
GQRNNGVLIS NATGKALTFA LFGLQDRGRL MIGHAAEVYE GQVIGIHSRS NDLTVNCLKG
KQLTNMRASG TDEAQVLTPH IQMTLEQALE FIDDDELVEV TPLSIRVRKK FLTENDRKRA
SRQG
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