| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3373 |
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| Symbol | |
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| ID | 4605620 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3998780 |
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| End bp | 3999859 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639782793 |
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| Product | type IV pilus biogenesis protein PilM |
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| Protein accession | YP_929245 |
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| Protein GI | 119776505 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4972] Tfp pilus assembly protein, ATPase PilM |
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| TIGRFAM ID | [TIGR01175] type IV pilus assembly protein PilM |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0745498 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTTCAA ATCTATGGAA GCGTCAGGCT CCGCAGATGG TGGGGATCGA CATTGGCTCC
CATGAAGTCA AAGCGATTCT GCTGAGCAAG ACGGCTGATG GTTATAAAAT TGTAAGTCAC
GCTGCTGTTC CCGTGAAAAA GGGAGCCGTA AACGATCACG ACATTCGTGA TGCTGCGGCC
GTTGTTGATT GTTTGCGTCA ACTCAGGCGC ACCCTCCCAA AGAGTTGCAA ATTTGCAGCT
GTAGCAGTCT CTGGGTCTGC GGTGATGACC AAGGTGATCT ACATGGATGC TTCGCTAAGC
GAAGCTGAAA TGGAAGCGCA AATTGAGATC GAAGCCGATA ACCTTATCCC TTACTCTCTC
GATGAAGTCA GCATCGATTT TGAAACCCTG AGCGTTAACA GTATTGACCC CAGCAAAGTC
GATGTGCTCC TGAGCGCTTG TCGAACAGAG AATATCGATG CCAGGGTGGA TGCGCTGGAC
GAAGTTGACC TTGAAACTAA GGTTGTCGAT ATCGAAGGGT ATGCGCTGGG CCGTTCGGCA
GAGCTCATTT TTGGCCAACT TCCAGAGGGA GCGAGCCAGA AGGTCGTTGC CATGGTCGAT
ATTGGCGCCA ACATGACCAC CTTTGCTGTT GTCGACCAAG GGGAAACCGC TTTCACTCGC
GAACAGGCCT TCGGTGGCGA GCAGTTCACT CAATCTATTT TGTCTTTTTA CGGCATGTCC
TATGAGCAAG CTGAAAAAGC CAAAGTAGAA GGCGATTTGC CCCGTAACTA TATGTTCGAG
GTGTTATCTC CTTTCCAAAC ACAGCTTTTG CAGCAGATAA AGAGAACGCT GCAAATCTAC
TGCACATCCA GCGGCAGAGA TAAAGTGGAT TACATCGTGC TGTGCGGTGG AACCTCCCGT
CTTGAAGGTA TGGCAAATTT GCTGACCAAC GAACTGGGTG TACATACGAT AATTGCCGAC
CCTTTGCAGG GAAATTTGCA TGCCGACGAT TCTGTTAAAT CCACCTTGCA ACCCAGTATC
AGTAAATACA TGGTTGCCTG TGGCCTGGCA TTAAGGAGCT ACGGTCAATG GCGAACATAA
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| Protein sequence | MLSNLWKRQA PQMVGIDIGS HEVKAILLSK TADGYKIVSH AAVPVKKGAV NDHDIRDAAA
VVDCLRQLRR TLPKSCKFAA VAVSGSAVMT KVIYMDASLS EAEMEAQIEI EADNLIPYSL
DEVSIDFETL SVNSIDPSKV DVLLSACRTE NIDARVDALD EVDLETKVVD IEGYALGRSA
ELIFGQLPEG ASQKVVAMVD IGANMTTFAV VDQGETAFTR EQAFGGEQFT QSILSFYGMS
YEQAEKAKVE GDLPRNYMFE VLSPFQTQLL QQIKRTLQIY CTSSGRDKVD YIVLCGGTSR
LEGMANLLTN ELGVHTIIAD PLQGNLHADD SVKSTLQPSI SKYMVACGLA LRSYGQWRT
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