| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3197 |
|---|
| Symbol | |
|---|
| ID | 4605444 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 3789009 |
|---|
| End bp | 3790049 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639782613 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_929069 |
|---|
| Protein GI | 119776329 |
|---|
| COG category | [C] Energy production and conversion
[G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1819] Glycosyl transferases, related to UDP-glucuronosyltransferase |
|---|
| TIGRFAM ID | [TIGR00661] conserved hypothetical protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAC TGTACGGAGT GCAGGGGACG GGTAATGGCC ACTTGAGCCG GGCGAGGGTG
ATGGCCAAAG CCCTTGCCGA GCGCGGCGCC GAGGTTGATT ACCTGTTCAG TGGCAGACCC
CAATCGCAGT TTTTTGATAT GGACATCTTC GGTGACTACC GAGTTGCCAC CGGGCTGACC
TTTATCAGCA AGGCGGGACG CATCAGCTCG GTGGAGACGG TGCGCCATAA TCTCAGTTGC
CGCTGGTGGC AGGACATGCG CGGCCTGGAT CTCTCATCTT ACGATCTGGT GCTCAACGAT
TTTGAGCCCG TGAGCGCCTG GGCAGCCCGG CGGCAAAAGG TGCCCTGTAT TGGCATCAGC
CATCAGGCGG CGCTGCGCTT TGATGTACCC AAGGTGGGCA ACACCTGGTT TAACGAACGA
TTACTGCAAT ACTTTGCCCC CGTGGATGTG GCGCTTGGTT GTCACTGGCA TCATTTCGGT
TTCCCGCTGC TGCCACCCTT TGTGGATGTG GGTGAAGTCA GTGAAGAGCA TGGTCACGAT
ATCCTGGTCT ACCTGCCCTT TGAGGCTGCC GACGACATCA TTGATTTTCT GCGTCCCTTC
GAAAACTATC GGTTTTTGGT GTACCACGCC CAGTCGCCCA ATGGCCCTGT GCCCGAGCAT
ATTCAATGGC ATGGCTTCTG CCGCGAGGGA TTTCGCCGTC ATCTGGCTGA GGCCGGTGGT
GTGGTGGCCA ATGCGGGGTT TGAGCTTGCC AGCGAGGCAC TGACGCTGGG GAAAAAACTC
TTGGTAAAGC CACTGCTTGG ACAGTTTGAG CAGCTCTCCA ACGTGGCGGC ATTGCAATTG
TTGGGAGCGG CCCAAACCAT GATGCACCTG AGTCGCGATG TTATGCGCTC CTGGCTTAAG
TCAGCCAGCC CTGAGCCGGT GCGTTATCCC GCCGTGGGCG ACGCCCTGGT GCAATGGGTT
GAGCAGGGAG AATGGCACAG GGGCGATGTA CTCAGTGAGC AGCTGTGGTC ACAGGTGCGC
CTGCCCGACA CCTGGCGCTG A
|
|---|
| Protein sequence | MKILYGVQGT GNGHLSRARV MAKALAERGA EVDYLFSGRP QSQFFDMDIF GDYRVATGLT
FISKAGRISS VETVRHNLSC RWWQDMRGLD LSSYDLVLND FEPVSAWAAR RQKVPCIGIS
HQAALRFDVP KVGNTWFNER LLQYFAPVDV ALGCHWHHFG FPLLPPFVDV GEVSEEHGHD
ILVYLPFEAA DDIIDFLRPF ENYRFLVYHA QSPNGPVPEH IQWHGFCREG FRRHLAEAGG
VVANAGFELA SEALTLGKKL LVKPLLGQFE QLSNVAALQL LGAAQTMMHL SRDVMRSWLK
SASPEPVRYP AVGDALVQWV EQGEWHRGDV LSEQLWSQVR LPDTWR
|
|---|
| |