| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3055 |
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| Symbol | |
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| ID | 4605302 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3630940 |
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| End bp | 3631920 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639782471 |
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| Product | tRNA-dihydrouridine synthase A |
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| Protein accession | YP_928927 |
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| Protein GI | 119776187 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00742] tRNA dihydrouridine synthase A |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.571193 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.701186 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCATCGC CACTCAACCG CACCTTCTCT GTCGCTCCCA TGCTGGATTG GACCGACAGA
CACTACCGCT ATTTTGCACG CCTGATGTCC AAAGAGGCGC TGCTTTATAC CGAAATGGTG
ACGACGGGCG CAATTCTCCA TGGCAAAGGC GATTATCTGG CCTACAACCA AGAAGAACAC
CCCCTGGCAT TGCAGCTGGG CGGTTCGGAC CCGAAGGATT TGGCGACCTG TGCCAAGCTC
GCTGAGGCCC GAGGTTATGA TGAAGTGAAT ATCAACGTAG GTTGCCCTTC GGATCGGGTA
CAGAATGGTC GCTTTGGCGC CTGTTTGATG GCCGAGCCTA AGTTGGTTGC TGAGTGTGTA
GACGCTATGC GCCAGCAGGT GTCTGTACCT GTCACAGTGA AGACCCGAAT TGGCATTGAT
GAGCAGGACT CTTACGGTTT TCTCACCGAC TTTGTCGAGA CCGTCTCAGC GGCTGGTTGC
GATACCTTTA TTATTCATGC CCGTAAGGCC TGGCTGCAGG GATTGAGTCC GAAAGAGAAC
CGTGAAATTC CTCCCCTGGA TTACGAGCGG GTGTATCAGC TGAAACGGGA CTACCCCCAA
CTTTCCATCA GTATCAATGG TGGCGTGACA AGTATAGAGC AGGCTAAAAC CCATTTGGCA
CAGCTCGATG GTGTCATGGT GGGTCGTGAA GCGTATCAGA ACCCCTATAT TTTAGCCTCG
GTGGACACCG AGCTTTGCGG CAAGCCCGCT GTTGTAAGCA GCCGTGAGGA GGTTATCGGG
AAGTTGCTTC CTTATATCGG GAAACACCTT GCCGATGGCG GACGCCTGAA CCATATCAGT
CGGCACATCA TTGGCTTGTA TCAGGGCTTG CCTGGCTCTC GCGCCTGGAG GCGACACCTC
AGTGAAAATG CCCATAAGCC GGGAGCAGGT ATCGAAGTGA TTGAAAATGC CATAAAAGCC
ATGGAGCTTA CCACCAATTA A
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| Protein sequence | MPSPLNRTFS VAPMLDWTDR HYRYFARLMS KEALLYTEMV TTGAILHGKG DYLAYNQEEH
PLALQLGGSD PKDLATCAKL AEARGYDEVN INVGCPSDRV QNGRFGACLM AEPKLVAECV
DAMRQQVSVP VTVKTRIGID EQDSYGFLTD FVETVSAAGC DTFIIHARKA WLQGLSPKEN
REIPPLDYER VYQLKRDYPQ LSISINGGVT SIEQAKTHLA QLDGVMVGRE AYQNPYILAS
VDTELCGKPA VVSSREEVIG KLLPYIGKHL ADGGRLNHIS RHIIGLYQGL PGSRAWRRHL
SENAHKPGAG IEVIENAIKA MELTTN
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