| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3022 |
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| Symbol | |
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| ID | 4605269 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3596256 |
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| End bp | 3597182 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639782433 |
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| Product | hflC protein |
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| Protein accession | YP_928894 |
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| Protein GI | 119776154 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
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| TIGRFAM ID | [TIGR01932] HflC protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000029647 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCGTT TAATATTGGT TATTCTGGTG GTGGTGATTG CTGTGATGAG TTCGTCTCTC
ATGGTAGTCA ACGAGGGTGA ACGTGCCATC GTGTCGCGCT TTAACGCCAT CGTAAAAGAA
AACGTTGACG GTACCGAGCG CACCAAGGTG TTCGAACCTG GTTTGCATTT CAAGATGCCC
TTTATCGATA CAGTGCGTAA TCTCGATGCC CGGGTGCAAA CCCTGGATGG GGCTGCAGAC
CGTTTCGTGA CTTCCGAGAA GAAAGACCTG ATGGTGGATT CTTACGTGAA GTGGCGCATC
CAGGACTTCG AAAAGTACTA CCTGTCTACC AACGGTGGTA TCAAGTCCAA TGCTGAAGCT
CTGCTGCAGC GCAAGGTGAA CAGCGACCTG CGTACCGAGT TTGGTCAGCG CACCATTAAG
GAAATTGTAT CCGGCGTACG TGCTGGCGAA GCCATCGACA AGGAAAACTC CGGTCGTGAC
GAGCTGCAAC GCAACGCTCT GGAAAATGTC CGCAAGAGTG CCGAAGACCT CGGGATTGAA
GTGGTCGACG TACGGGTGAA GCAGATTAAC CTGCCAACCA ATGTGAGCTC TTCCATCTTC
CAACGTATGC GTGCCGAGCG TCAGGCCGTG GCGAAAGAAC ATCGCGCCAA AGGTCGTGAG
GAAGCCGAAA AGATCCGTGC AACCGCCGAT GCCAACGTCG TGGTTCGCCT CTCCAACGCC
CAGCGTAACG CCCAGGTGAT CCGCGGTGAT GGTGATGCAG TAGCGGCCAA GATTTATGCC
GACGCTTACA AGAAGGACCC TGAGTTCTAT GCCTTCCTGA GAAGTCTTGA TGCCTACAAG
GCGAGCTTCT CTGGTAGCGG CAACATGATG GTGCTTGAAC CGGATAGTGA ATTCTTCCGC
TATATGAAAG AATCCAAACC AAAATAA
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| Protein sequence | MSRLILVILV VVIAVMSSSL MVVNEGERAI VSRFNAIVKE NVDGTERTKV FEPGLHFKMP
FIDTVRNLDA RVQTLDGAAD RFVTSEKKDL MVDSYVKWRI QDFEKYYLST NGGIKSNAEA
LLQRKVNSDL RTEFGQRTIK EIVSGVRAGE AIDKENSGRD ELQRNALENV RKSAEDLGIE
VVDVRVKQIN LPTNVSSSIF QRMRAERQAV AKEHRAKGRE EAEKIRATAD ANVVVRLSNA
QRNAQVIRGD GDAVAAKIYA DAYKKDPEFY AFLRSLDAYK ASFSGSGNMM VLEPDSEFFR
YMKESKPK
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