| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2423 |
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| Symbol | |
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| ID | 4604672 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2917552 |
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| End bp | 2918562 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639781820 |
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| Product | isocitrate dehydrogenase |
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| Protein accession | YP_928297 |
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| Protein GI | 119775557 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR00175] isocitrate dehydrogenase, NAD-dependent, mitochondrial type
[TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type
[TIGR02088] isopropylmalate/isohomocitrate dehydrogenases |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000245229 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTAAAA GAACGATTAC CGTAATCCCA GGTGATGGGA TCGGCCCAAG CATCATCGAC
TCCGCTCTGA AAATCCTCGA TAAGGCGGGT TGCGACTTCG AATATGAATT TGCCGATGCT
GGCCTGACGG CTCTGGAAAA GCATGGTGAA CTGCTGCCTC AGCGTACGCT GGATCTTATC
GAAAAGAACC GTATTACCCT GAAGGGTCCA CTGACTACTC CCGTTGGTGA AGGCTTTACC
TCCATCAACG TTACCCTGCG TAAAAAGTTC AGCCTGTACG CCAACGTACG TCCAGTGAAC
TCTTTCAAGG GAACCCAGGC CAGATACGAA AATATCGACA TCATCACTGT CCGTGAAAAC
ACCGAAGGCA TGTACTCCGG TTACGGCCAG AAAGTATCAG ATGACGGCAG CACTGCCGAA
GCCACCAGCA TCATCACCCG TCAGGGTGCT GAGCAGATCA CCACTTTTGC CTACGAGCTG
GCCCGCAAGG AAGGCCGTAA GAAAGTGACC ATAGTGCACA AGGCCAATAT CATGAAGTCC
ACCTCAGGCC TGTTCCTGAA AGTGGCCCGT GAAGTGAGCC AGCGCTATCC CGACATCACC
ACCGAAGAAA TGATTGTGGA CGCCACCTGT ATGAAGCTGG TGATGAACCC GGAAAACTTC
GATGTGATTG TAACTACCAA CCTGTTTGGT GACATTCTGT CTGACCTCTG TGCCGGTCTG
GTGGGTGGTC TGGGCATGGC GCCCGGTGCC AACATCGGTG CCAGTGCGGC TATTTTTGAA
GCCGTACACG GCAGTGCCCC GGATATCGCC GGTAAAAACC TGGCTAACCC CACTTCCGTG
ATCCTGGCCT CTGTACAGAT GCTGGAATAC TTGGGCATGG CTGACAAAGC AGCGGCTATC
CGCAATGCCG TGGCGGCTGT GATTGAAGAA GGCGACCGTA CTACCCGCGA TCTCGGCGGC
ACCCACGGTA CCACCGACTT CACTCAAGCC GTCCTCGACA GACTCGCCTG A
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| Protein sequence | MSKRTITVIP GDGIGPSIID SALKILDKAG CDFEYEFADA GLTALEKHGE LLPQRTLDLI
EKNRITLKGP LTTPVGEGFT SINVTLRKKF SLYANVRPVN SFKGTQARYE NIDIITVREN
TEGMYSGYGQ KVSDDGSTAE ATSIITRQGA EQITTFAYEL ARKEGRKKVT IVHKANIMKS
TSGLFLKVAR EVSQRYPDIT TEEMIVDATC MKLVMNPENF DVIVTTNLFG DILSDLCAGL
VGGLGMAPGA NIGASAAIFE AVHGSAPDIA GKNLANPTSV ILASVQMLEY LGMADKAAAI
RNAVAAVIEE GDRTTRDLGG THGTTDFTQA VLDRLA
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