| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2287 |
|---|
| Symbol | fliP |
|---|
| ID | 4604537 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2753225 |
|---|
| End bp | 2753974 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639781684 |
|---|
| Product | flagellar biosynthesis protein FliP |
|---|
| Protein accession | YP_928162 |
|---|
| Protein GI | 119775422 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1338] Flagellar biosynthesis pathway, component FliP |
|---|
| TIGRFAM ID | [TIGR01103] flagellar biosynthetic protein FliP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.340468 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.948189 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCCGCG TGTTAGCGAT GTTATTCTGG ATATTGGCTG GCATGGCCTC GCTGCCAGCC
TTCGGCGCAG ATGGTGTCTT GCCTGCGGTA ACCGTCACCA CCACACCGGA TGGGGGCACA
CAGTACTCGG TCACACTGCA AATTCTGATG CTGATGACGG CGCTGAGCTT TTTGCCCGCC
ATGGTTATCA TGCTCACTTC CTTTACCCGT ATCATAGTCA CCCTGTCGTT GCTCAGACAG
GCTATCGGCC TGCAGCAGGC ACCCTCGAAT CAGGTACTGA TTGGCCTGAG TCTCTTTATG
ACCTTTTTCA TCATGGCGCC CGTGTTCGAC AAAATTTATG AGCAGGGCGT GAAACCATAT
ATGGAAGAAA CCTTGCCCAT CGACCAGGCA TTCGAGCGAG GTAAAGAGCC GCTGAAAGCC
TTTATGTTGT CGCAGGTGCG TATCACCGAC TTGGAAACCT TCGTGAATAT CGCCGGCTAC
GACAACATCA AGTCACCCGA AGAGGCGCCC ATGACGGTGA TTATTCCTGC CTTTATCACC
AGCGAGTTGA AAACCGCCTT CCAGATTGGC TTTATGCTGT TTGTGCCCTT TTTGGTTATC
GACCTGGTGG TCGCCAGTAT CCTGATGGCC ATGGGGATGA TGATGCTGTC GCCAATGATT
GTGTCATTGC CCTTTAAAAT CATGCTGTTT GTGCTGGTGG ATGGCTGGAG CCTGGTGATG
GGCACGTTAG CCAACAGTTT TGGTACCTGA
|
|---|
| Protein sequence | MTRVLAMLFW ILAGMASLPA FGADGVLPAV TVTTTPDGGT QYSVTLQILM LMTALSFLPA
MVIMLTSFTR IIVTLSLLRQ AIGLQQAPSN QVLIGLSLFM TFFIMAPVFD KIYEQGVKPY
MEETLPIDQA FERGKEPLKA FMLSQVRITD LETFVNIAGY DNIKSPEEAP MTVIIPAFIT
SELKTAFQIG FMLFVPFLVI DLVVASILMA MGMMMLSPMI VSLPFKIMLF VLVDGWSLVM
GTLANSFGT
|
|---|
| |