| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2227 |
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| Symbol | |
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| ID | 4604477 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2690378 |
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| End bp | 2691370 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639781624 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_928102 |
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| Protein GI | 119775362 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000157838 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAGC CTTTGGATAA ACAACTGGCA GAGCTCGATA TTTTTTCACT GCTGCTCTTT
CGCGCCATCT TCGAGACCGG GCACGCCAAC ATCGCTGCCA GACAGTTGGA TGTGTCTGCC
CCCAAAGTCA GCCGGGCACT CGCCAGCTTA CGGCTTATCT TTGCCGATGA GCTCTTCTAT
CGCCGTCAGC AGGGGTTCAG ACCAACTCCG CTGGCAGAGC AGATCTATCC TGCCATTCGC
GAGCTGACCG ACAGTATTAA CCTCCTTGGC ATGCAGCTTA AAGACCATCA GGCATTCCAC
AGACAAGAGT GTCAGGTATT CGACCTGGCC GTCAGTTCCG GGATACTGAC GACCCTGGCG
TTGGAATTCA ACCGCAGAGA AGGGCTCTGC CCTTCCGTGG TGTTACATCA TTGGCAGGAA
AATACGGCCG ACAGGATACA TGCCGGCGAG CTGGATTTGG GCCTGGCATT GGCACCTGAA
CCACATACCG AACTCAGTTA CGAACGCCTT TGCGACGCCC CCGGTCTTTG CCTGGTCGGC
GCGGCCAATC ACCCTATTTG GCAATATACC GATATTTGTC TTGAGCACAT CTGCGAATAT
CCGTTTTTGT GCATGAACTA CCCCGGATTC AACGATAAAG TTGACCCGCT GGAGCTGTTT
TGCCACAGGG AAGGCCTTAT TCCACCCACG GTGCTGAGGG TGACGGATAA AGAAGAATGG
TTTGGCCATC TTTTGTGCCA ACACAGCCTG GCATTTGCCT CGCCGCTGGA ATGGGGATTA
CTGAATGCCT TGCCCGGTGT TGAAATCAAA CATCTGCCTG CAAAGGAAAT TTCCCGTCTG
CACAGTGGTT CTGCCGTGCC CGGCCTCTAC CTTATCGAAA AGCCTGCCCA TCACCGCCGA
TACAGCCCAG ACGACAGGGA AAAATTGCTG CACATTATCT CGCTCACATT GGGATTGGTA
ACCGAGGATC ATCCGGTAAA TTTCAGCATC TAA
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| Protein sequence | MNKPLDKQLA ELDIFSLLLF RAIFETGHAN IAARQLDVSA PKVSRALASL RLIFADELFY
RRQQGFRPTP LAEQIYPAIR ELTDSINLLG MQLKDHQAFH RQECQVFDLA VSSGILTTLA
LEFNRREGLC PSVVLHHWQE NTADRIHAGE LDLGLALAPE PHTELSYERL CDAPGLCLVG
AANHPIWQYT DICLEHICEY PFLCMNYPGF NDKVDPLELF CHREGLIPPT VLRVTDKEEW
FGHLLCQHSL AFASPLEWGL LNALPGVEIK HLPAKEISRL HSGSAVPGLY LIEKPAHHRR
YSPDDREKLL HIISLTLGLV TEDHPVNFSI
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