| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2147 |
|---|
| Symbol | |
|---|
| ID | 4604397 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2594061 |
|---|
| End bp | 2594549 |
|---|
| Gene Length | 489 bp |
|---|
| Protein Length | 162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639781532 |
|---|
| Product | colicin V production protein |
|---|
| Protein accession | YP_928022 |
|---|
| Protein GI | 119775282 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1286] Uncharacterized membrane protein, required for colicin V production |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.936952 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTGGA TTGATTACGC CATTATTTTT ATTATCGGAC TGTCCACCCT TATCAGTCTG
ATCCGCGGCT TTGCCAAAGA AGCCATGTCT TTGCTGGTGT GGTTTGCTGC CTTTTTTGTC
GCCAGCCAAT TCTATGAAGA TCTCGCCGTT CACCTGACTC AGCTGCAGGA TGAAATGCTT
CGCAACGGCG TGGCCATTGC TATTCTCTTT GTAACCACCC TTATCCTCGG CGCCCTGGTG
AATTACATCC TGGGCCAATT AGTGGCAAAA ACCGGTTTAT CGGGTACCGA CAGACTCCTG
GGTTTGTGTT TCGGTGCCTT GCGCGGCGCA CTGATTGTCA GTGCGATTTT GTTTTTCATG
GATGCCTTTA CCGGCGCTCC CAACACCCCC TGGTGGAAGG AGTCCCGACT GGTGCCCGAA
TTCGGGGTTG TGATCCAGTG GTTCTTCCAC TATCTGGAAA ACACCTCAAG CTTCGTACCC
AAAATATAA
|
|---|
| Protein sequence | MVWIDYAIIF IIGLSTLISL IRGFAKEAMS LLVWFAAFFV ASQFYEDLAV HLTQLQDEML
RNGVAIAILF VTTLILGALV NYILGQLVAK TGLSGTDRLL GLCFGALRGA LIVSAILFFM
DAFTGAPNTP WWKESRLVPE FGVVIQWFFH YLENTSSFVP KI
|
|---|
| |