| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2099 |
|---|
| Symbol | |
|---|
| ID | 4604349 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2543313 |
|---|
| End bp | 2544059 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639781484 |
|---|
| Product | UMP phosphatase |
|---|
| Protein accession | YP_927974 |
|---|
| Protein GI | 119775234 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0647] Predicted sugar phosphatases of the HAD superfamily |
|---|
| TIGRFAM ID | [TIGR01460] Haloacid Dehalogenase Superfamily Class (subfamily) IIA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.204469 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.749352 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACA TCATCTGTGA TATCGACGGA GTACTGCTGC ACGACAACAA ACTGGTGCCC
GGCAGCGACA AATTTATTCA TCGGGTGCTG GAACAAGGCA ACCCCTTGGT TATCCTGACT
AATTACCCGG TACAAACCGG CAAAGATCTG CAAAACCGCC TCGATGCCGC GGGCATTAAC
GTCCCCGAGG AATGTTTTTA CACCGCCGCC ATGGCCACCG CCGACTTTTT GAAACATCAG
GAAGGCAGCA AAGCCTTTGT GATTGGCGAA GGCGCTCTCA CCCACGAACT CTACAAGGCC
GGTTTTACCA TCACCGACAT CAACCCCGAC TTTGTGATTG TGGGTGAAAC CCGCTCTTAC
AACTGGGATA TGATCCATAA AGCGGCACGG TTTGTAGCCG ATGGCGCCCG CTTTATTGCC
ACCAATCCAG ATACCCATGG CCCGGCATTT TCACCGGCTT GTGGCGCCCT GTGCGCGCCC
ATTGAGCGGA TCACCGGCCG CAAACCCTTT TACGTGGGTA AACCCAGCAG CTGGATAGTG
CGTTCGGCCT TAAACCACAT CAACGGCCAC TCGGAAAACA CGGTTATCAT TGGCGATAAT
ATGCGCACCG ACATTCTGGC CGGTTTCCAG GCGGGCCTTG AGACCATACT GGTACTCACT
GGCGTGAGCC GTCTTGAGGA CATAGAGAAA GAGCCGTTCA GGCCCAATCA TGTGTTTAAT
TGTGCCGGTG ACATCGATAT TTTCTGA
|
|---|
| Protein sequence | MKNIICDIDG VLLHDNKLVP GSDKFIHRVL EQGNPLVILT NYPVQTGKDL QNRLDAAGIN
VPEECFYTAA MATADFLKHQ EGSKAFVIGE GALTHELYKA GFTITDINPD FVIVGETRSY
NWDMIHKAAR FVADGARFIA TNPDTHGPAF SPACGALCAP IERITGRKPF YVGKPSSWIV
RSALNHINGH SENTVIIGDN MRTDILAGFQ AGLETILVLT GVSRLEDIEK EPFRPNHVFN
CAGDIDIF
|
|---|
| |