| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2080 |
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| Symbol | |
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| ID | 4604330 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2522415 |
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| End bp | 2524181 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639781457 |
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| Product | helicase |
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| Protein accession | YP_927955 |
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| Protein GI | 119775215 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1061] DNA or RNA helicases of superfamily II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.453275 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.977675 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCACG ATAGACGCCG CCAGCCGACA ATGACGATAA AACTCAGGGA TTATCAGCAA
GATGCCATAG AAGCGACGCT CGCCCACTTC AGAACGAGCC GCGAGTCTGC GCTATTGGTA
CTGCCAACCG GCGCCGGAAA AAGCCTGGTA ATAGCCGAGC TTGCCCGCTT GGCAAAAGGG
CGGGTATTGG TGCTGACCCA CGTTAAAGAA TTGGTGGCAC AAAACGCCCA AAAGGTAGAT
GCGCTCGCTG GCAACGCCAG TATCTTTTCC GCCGGACTGG GCGAAAAAGA CAGCGGCGGT
AAAACCGTGG TGGCCGGTAT TCAATCGGCT GCTGTCAATG TTGCGGCCTT TGATGAGCCA
TTTTCGCTCG TGATCATCGA TGAGTGCCAC AGAGTCAGCC TTGATGAAAA CAGCCAGTAT
CGGCAGGTCT TCAGTCAGCT GCGGGAGAAA AACCCCGATC TCTTGCTGCT TGGACTCACT
GCCACCCCCT ATCGGTTGGG GGAAGGCGCC ATTTATAAAC GCCATGTTCG CGGTCATGTG
GGCAACCCGG ATAAAGGGGT GTTTGATGTC TGTATCTTCG AACTGCCCAT CCGCAGTTTG
ATTAAGCAAG GGTATTTAAC CGAGCCGTTG CTGCTCGATG GTCTCGCAGC TCAGTATAAC
TTCGCCGCAC TGAAGGCATC AGAGGATGCG GATTACCAGG AGGCTGAAGT TCAGGCTATT
CTTGACACCA GTACCCGGGC TACGACGACC ATCATGGGTC AGCTAAAGGC CCTGGCCCAG
CAGCGGCTGG GAGTCATTAT CTTTGCGGCT ACGGTTCGCC ATGCAAAAGA AATCATGGCG
CTGCTGGATG AAAGTGCAGC ACTTATCACC GCCGATACTC CCGGCCCCGA GCGCGATAAC
ATCATCACCG CATTTAAAGC ACAGGAACTG AAATTTCTGG TGAATGTGGC GGTGCTGACC
ACGGGCTTTG ACGCGCCCCA TGTGGATTTG ATAGCCATAT TACGGCCCAC GGCCTCGGTA
AGTCTGTTTC AGCAAATGGT TGGGCGGGGC CTCAGACTGT TTCCAGGCAA GGCTGAGTGT
CTCATCCTTG ACTACGCCGC CAACGGCTTC AGCCTGTATC ACCCGGATGT GGGTAAGCCC
AGACCCGACA GCAAAAGCGT CCCCGTGCAG GTGCCCTGCC CAGCCTGCGG CTTTGCCAAC
CTCTTTTGGG GCAAAGCCGA TACCGATGGC GACATAATCG AGCACTACGG CCGGCGCTGC
CAGGGGTTAC TCGACGATGG CAATCAGTGT GATTTTCGTT TTCGGGCACG TATCTGTCCC
GATTGCGGAG CCGAAAATGA CATTGCTGCC AGAGTCTGCC GTGGCTGCGA CTCTGCTCTC
GTCGACCCGG ACAAGCACCT TAAAGCCGTG CTTGCACATA AGCACCATCA CCTCTTTAAA
GTGACCGACA TGCTGCTTGG CGCCACCGAC GCTGGCCTGG AGGTGACTTA TCTGGATATG
GACGGCAACA GCTTCATAGA AAGGTTCAAA ATGCAAACCC CGGGGCAGAG GAAAGCCCTT
TACGCCCTGT TTTTACTCCG CCACCAACGG GCTCCGGGAC TAGCACTGCC CAAATATCCT
GACGCAAAAG CCCTGATAAA AGACAGCGCA AAATTCAGGG CGCCGGAGCT GCTGTTGCTG
AAAAAGAGCA AGTTTGGTTG GCAGCTCGTC GATAAATTTT TTGATTACCG GGGTAAGTAT
CAAACCCGCG CTCGTTTTGA AGACTAA
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| Protein sequence | MQHDRRRQPT MTIKLRDYQQ DAIEATLAHF RTSRESALLV LPTGAGKSLV IAELARLAKG
RVLVLTHVKE LVAQNAQKVD ALAGNASIFS AGLGEKDSGG KTVVAGIQSA AVNVAAFDEP
FSLVIIDECH RVSLDENSQY RQVFSQLREK NPDLLLLGLT ATPYRLGEGA IYKRHVRGHV
GNPDKGVFDV CIFELPIRSL IKQGYLTEPL LLDGLAAQYN FAALKASEDA DYQEAEVQAI
LDTSTRATTT IMGQLKALAQ QRLGVIIFAA TVRHAKEIMA LLDESAALIT ADTPGPERDN
IITAFKAQEL KFLVNVAVLT TGFDAPHVDL IAILRPTASV SLFQQMVGRG LRLFPGKAEC
LILDYAANGF SLYHPDVGKP RPDSKSVPVQ VPCPACGFAN LFWGKADTDG DIIEHYGRRC
QGLLDDGNQC DFRFRARICP DCGAENDIAA RVCRGCDSAL VDPDKHLKAV LAHKHHHLFK
VTDMLLGATD AGLEVTYLDM DGNSFIERFK MQTPGQRKAL YALFLLRHQR APGLALPKYP
DAKALIKDSA KFRAPELLLL KKSKFGWQLV DKFFDYRGKY QTRARFED
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